STX5-DT

STX5 divergent transcript, the group of Divergent transcripts

Basic information

Region (hg38): 11:62832234-62855823

Links

ENSG00000256690 ∙ NCBI:105369332 ∙ ∙ HGNC:55488 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the STX5-DT gene.

• Inborn genetic diseases (7 variants)
• not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the STX5-DT gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			7		1	8
Total	0	0	7	0	1

Variants in STX5-DT

This is a list of pathogenic ClinVar variants found in the STX5-DT region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-62833013-G-A			Benign (Dec 31, 2019)
11-62833026-C-G		not specified	Uncertain significance (May 22, 2023)
11-62833629-C-G		not specified	Uncertain significance (Jan 03, 2024)
11-62833806-C-T		not specified	Uncertain significance (Jul 05, 2022)
11-62833809-G-A		not specified	Uncertain significance (Aug 14, 2023)
11-62833868-G-C		not specified	Uncertain significance (Apr 08, 2022)
11-62833896-G-A		not specified	Uncertain significance (May 09, 2023)
11-62833934-C-T		not specified	Uncertain significance (Aug 14, 2023)
11-62833935-G-A		not specified	Uncertain significance (Oct 04, 2022)
11-62834282-G-A		not specified	Uncertain significance (Sep 15, 2021)
11-62834436-G-C		not specified	Uncertain significance (Jan 17, 2024)
11-62834436-G-T		not specified	Uncertain significance (Sep 22, 2022)
11-62834479-T-C		not specified	Likely benign (Nov 10, 2022)
11-62834497-G-A		not specified	Uncertain significance (Mar 14, 2023)
11-62834523-C-T		not specified	Uncertain significance (Jan 29, 2024)
11-62835460-T-C		not specified	Uncertain significance (Mar 07, 2023)
11-62835487-C-A		not specified	Uncertain significance (May 27, 2022)
11-62835508-G-A		not specified	Uncertain significance (Mar 23, 2023)
11-62835529-G-A		not specified	Uncertain significance (Sep 16, 2021)
11-62835718-C-T		not specified	Uncertain significance (Dec 03, 2021)
11-62835723-G-A		not specified	Uncertain significance (Mar 01, 2023)
11-62835802-G-A		not specified	Uncertain significance (Nov 17, 2022)
11-62835992-T-C		not specified	Uncertain significance (Jun 13, 2023)
11-62839122-C-G		not specified	Uncertain significance (Dec 28, 2022)
11-62839202-G-T		not specified	Uncertain significance (Feb 01, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP