SYT15-AS1

SYT15 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 10:46580708-46598150

Links

ENSG00000231187 ∙ NCBI:101927699 ∙ ∙ HGNC:56167 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SYT15-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SYT15-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			6	2		8
Total	0	0	6	2	0

Variants in SYT15-AS1

This is a list of pathogenic ClinVar variants found in the SYT15-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-46580926-C-G		not specified	Likely benign (Sep 21, 2023)
10-46580964-G-C		not specified	Uncertain significance (Apr 06, 2023)
10-46580995-C-T		not specified	Uncertain significance (Jan 26, 2022)
10-46581941-T-C		not specified	Uncertain significance (Oct 03, 2022)
10-46581949-G-A		not specified	Uncertain significance (Sep 05, 2024)
10-46582111-C-A		not specified	Uncertain significance (Sep 30, 2021)
10-46582124-G-A		not specified	Uncertain significance (Nov 23, 2024)
10-46582147-C-T		not specified	Likely benign (Apr 04, 2023)
10-46583750-A-T		not specified	Uncertain significance (Oct 01, 2024)
10-46583775-T-C		not specified	Uncertain significance (Feb 06, 2024)
10-46583783-G-A		not specified	Uncertain significance (Aug 12, 2024)
10-46583861-C-G		not specified	Uncertain significance (Jul 19, 2022)
10-46584498-C-G		not specified	Uncertain significance (Jun 01, 2023)
10-46584559-C-T		not specified	Uncertain significance (Sep 03, 2024)
10-46584577-C-T		not specified	Uncertain significance (Oct 26, 2022)
10-46585630-A-T		not specified	Uncertain significance (Sep 30, 2024)
10-46585631-A-G		not specified	Uncertain significance (Oct 12, 2024)
10-46585670-G-A		not specified	Uncertain significance (Aug 27, 2024)
10-46585691-A-G		not specified	Likely benign (Sep 04, 2024)
10-46585694-A-C		not specified	Uncertain significance (Oct 06, 2024)
10-46585735-G-A		not specified	Uncertain significance (Oct 04, 2024)
10-46587613-G-A		not specified	Uncertain significance (Nov 07, 2023)
10-46587631-G-A		not specified	Uncertain significance (Aug 04, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP