SYT9-AS1

SYT9 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 11:7418826-7513675

Links

ENSG00000251364 ∙ NCBI:100506258 ∙ ∙ HGNC:56173 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the SYT9-AS1 gene.

• Inborn genetic diseases (18 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the SYT9-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			17	1		18
Total	0	0	17	1	0

Variants in SYT9-AS1

This is a list of pathogenic ClinVar variants found in the SYT9-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-7420507-G-A		not specified	Uncertain significance (Dec 13, 2022)
11-7420519-G-A		not specified	Uncertain significance (Mar 02, 2023)
11-7420549-G-A		not specified	Uncertain significance (Jul 31, 2024)
11-7420574-A-T		not specified	Uncertain significance (Mar 04, 2024)
11-7420600-C-T		not specified	Uncertain significance (May 07, 2025)
11-7420630-G-C		not specified	Uncertain significance (Nov 05, 2021)
11-7466796-G-A		not specified	Uncertain significance (Mar 26, 2025)
11-7485892-G-A		not specified	Uncertain significance (Jan 15, 2025)
11-7485916-T-G		not specified	Uncertain significance (Feb 16, 2023)
11-7485945-C-G		not specified	Uncertain significance (May 04, 2025)
11-7485960-C-G		not specified	Uncertain significance (Mar 28, 2025)
11-7485987-C-A		not specified	Uncertain significance (Feb 17, 2024)
11-7485994-G-T		not specified	Uncertain significance (Mar 08, 2025)
11-7488154-A-G		not specified	Uncertain significance (Sep 16, 2021)
11-7488160-G-A		not specified	Uncertain significance (Apr 11, 2025)
11-7488277-C-A		not specified	Uncertain significance (Feb 22, 2023)
11-7488293-T-C		not specified	Uncertain significance (Oct 11, 2024)
11-7488296-A-T		not specified	Uncertain significance (Feb 05, 2024)
11-7488322-G-A		not specified	Uncertain significance (May 06, 2025)
11-7488325-G-A		not specified	Uncertain significance (Apr 29, 2024)
11-7488362-T-C		not specified	Uncertain significance (May 26, 2024)
11-7488398-G-A		not specified	Uncertain significance (Jan 24, 2025)
11-7509445-A-C		not specified	Uncertain significance (Apr 14, 2025)
11-7509473-T-A		not specified	Uncertain significance (May 23, 2025)
11-7509478-G-T		not specified	Uncertain significance (Dec 28, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP