TAAR6

trace amine associated receptor 6, the group of Trace amine receptors

Basic information

Region (hg38): 6:132570322-132571359

Previous symbols: [ "TRAR4" ]

Links

ENSG00000146383 ∙ NCBI:319100 ∙ OMIM:608923 ∙ HGNC:20978 ∙ Uniprot:Q96RI8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TAAR6 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TAAR6 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			15	1	2	18
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	15	1	2

Variants in TAAR6

This is a list of pathogenic ClinVar variants found in the TAAR6 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-132570329-G-T		not specified	Uncertain significance (Oct 28, 2023)
6-132570362-G-A		not specified	Uncertain significance (Feb 01, 2023)
6-132570398-C-T		not specified	Uncertain significance (Jul 14, 2021)
6-132570409-G-C		not specified	Uncertain significance (Feb 28, 2023)
6-132570471-C-A		not specified	Uncertain significance (May 13, 2024)
6-132570483-G-A			Benign (Apr 07, 2018)
6-132570504-G-C		not specified	Uncertain significance (Feb 16, 2023)
6-132570524-A-G		not specified	Uncertain significance (Nov 08, 2022)
6-132570617-A-G			Benign (Aug 30, 2018)
6-132570626-G-A		not specified	Uncertain significance (Dec 03, 2024)
6-132570729-C-A		not specified	Uncertain significance (Nov 07, 2023)
6-132570770-G-A		not specified	Uncertain significance (Oct 03, 2024)
6-132570806-T-G		not specified	Uncertain significance (Jul 14, 2021)
6-132570875-A-G		not specified	Uncertain significance (Oct 09, 2024)
6-132570877-T-C		not specified	Uncertain significance (Nov 20, 2024)
6-132570898-G-A		not specified	Likely benign (Jan 09, 2024)
6-132570935-C-T		not specified	Uncertain significance (Jan 03, 2024)
6-132570949-A-G		not specified	Uncertain significance (May 21, 2024)
6-132570958-A-G		not specified	Uncertain significance (Apr 11, 2023)
6-132571025-G-A		not specified	Uncertain significance (Sep 22, 2023)
6-132571080-G-C		not specified	Uncertain significance (Aug 05, 2024)
6-132571090-G-A		not specified	Uncertain significance (Feb 21, 2024)
6-132571112-T-C		not specified	Uncertain significance (Dec 06, 2024)
6-132571117-G-A		not specified	Uncertain significance (Jul 06, 2021)
6-132571148-T-C		not specified	Uncertain significance (May 31, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TAAR6	protein_coding	protein_coding	ENST00000275198	1	1038

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0167	0.896	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-1.15	228	184	1.24	0.00000934	2239
Missense in Polyphen		55	42.767	1.286		607
Synonymous	-1.93	100	78.3	1.28	0.00000488	701
Loss of Function	1.44	4	8.53	0.469	4.60e-7	114

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Orphan receptor. Could be a receptor for trace amines. Trace amines are biogenic amines present in very low levels in mammalian tissues. Although some trace amines have clearly defined roles as neurotransmitters in invertebrates, the extent to which they function as true neurotransmitters in vertebrates has remained speculative. Trace amines are likely to be involved in a variety of physiological functions that have yet to be fully understood.
• Pathway: Neuroactive ligand-receptor interaction - Homo sapiens (human);Signaling by GPCR;Signal Transduction;G alpha (s) signalling events;Amine ligand-binding receptors;Class A/1 (Rhodopsin-like receptors);GPCR ligand binding;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.125

Intolerance Scores

• loftool: 0.406
• rvis_EVS: 2.02
• rvis_percentile_EVS: 97.71

Haploinsufficiency Scores

• pHI: 0.0967
• hipred: N
• hipred_score: 0.131

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0714

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Taar6
• Phenotype: hearing/vestibular/ear phenotype

Gene ontology

• Biological process: G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: trace-amine receptor activity;G protein-coupled receptor activity