TAF11

TATA-box binding protein associated factor 11, the group of General transcription factor IID complex subunits

Basic information

Region (hg38): 6:34877462-34889192

Previous symbols: [ "TAF2I" ]

Links

ENSG00000064995

∙ NCBI:6882 ∙ OMIM:600772 ∙ HGNC:11544 ∙ Uniprot:Q15544 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TAF11 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TAF11 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			5 clinvar			5
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	5	0	0

Variants in TAF11

This is a list of pathogenic ClinVar variants found in the TAF11 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Phenotype	Significance	ClinVar
6-34878633-C-G	not specified	Uncertain significance (Sep 14, 2022)	2311927
6-34880339-G-T	not specified	Uncertain significance (Jan 26, 2022)	2221062
6-34882973-C-A	not specified	Uncertain significance (Apr 14, 2023)	2536772
6-34887932-G-C	not specified	Uncertain significance (Jan 19, 2024)	3173397
6-34887936-G-T	not specified	Uncertain significance (Jun 09, 2022)	2214377

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TAF11	protein_coding	protein_coding	ENST00000361288	5	10312

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.112	0.862	125738	0	6	125744	0.0000239

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.995	87	117	0.742	0.00000605	1377
Missense in Polyphen		19	29.491	0.64427		371
Synonymous	0.744	37	43.2	0.856	0.00000233	398
Loss of Function	1.92	3	9.32	0.322	3.94e-7	126

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000185	0.000185
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000549	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.00000879	0.00000879
Middle Eastern	0.0000549	0.0000544
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Function: FUNCTION: Core TAFII present in both of the previously described TFIID species which either lack or contain TAFII30 (TFIID alpha and TFIID beta respectively).;
Pathway: Basal transcription factors - Homo sapiens (human);Disease;Gene expression (Transcription);Generic Transcription Pathway;Transcription of the HIV genome;Late Phase of HIV Life Cycle;HIV Life Cycle;HIV Infection;RNA Polymerase II HIV Promoter Escape;RNA Polymerase II Pre-transcription Events;RNA Polymerase II Transcription Initiation;RNA Polymerase II Transcription Initiation And Promoter Clearance;HIV Transcription Initiation;RNA polymerase II transcribes snRNA genes;RNA Polymerase II Transcription;Infectious disease;RNA Polymerase II Promoter Escape;RNA Polymerase II Transcription Pre-Initiation And Promoter Opening;Regulation of TP53 Activity through Phosphorylation;Regulation of TP53 Activity;Transcriptional Regulation by TP53 (Consensus)

Recessive Scores

pRec: 0.0978

Intolerance Scores

loftool: 0.334
rvis_EVS: 0.33
rvis_percentile_EVS: 73.11

Haploinsufficiency Scores

pHI: 0.118
hipred: Y
hipred_score: 0.748
ghis: 0.420

Essentials

essential_gene_CRISPR: N
essential_gene_CRISPR2: S
essential_gene_gene_trap: K
gene_indispensability_pred: E
gene_indispensability_score: 0.781

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

Gene name: Taf11
Phenotype

Gene ontology

Biological process: transcription by RNA polymerase II;transcription initiation from RNA polymerase II promoter;snRNA transcription by RNA polymerase II;positive regulation by host of viral transcription;RNA polymerase II preinitiation complex assembly;regulation of signal transduction by p53 class mediator;positive regulation of nucleic acid-templated transcription
Cellular component: nucleoplasm;transcription factor TFIID complex;Golgi apparatus
Molecular function: transcription coactivator activity;protein binding;transcription factor binding;vitamin D receptor binding;thyroid hormone receptor binding;protein heterodimerization activity;protein N-terminus binding