TAFAZZIN

protein-coding

tafazzin, phospholipid-lysophospholipid transacylase

Gene summary

This gene encodes a protein that is expressed at high levels in cardiac and skeletal muscle. Mutations in this gene have been associated with a number of clinical disorders including Barth syndrome, dilated cardiomyopathy (DCM), hypertrophic DCM, endocardial fibroelastosis, and left ventricular noncompaction (LVNC). Multiple transcript variants encoding different isoforms have been described. A long form and a short form of each of these isoforms is produced; the short form lacks a hydrophobic leader sequence and may exist as a cytoplasmic protein rather than being membrane-bound. Other alternatively spliced transcripts have been described but the full-length nature of all these transcripts is not known. [provided by RefSeq, Jul 2008]

Previous symbols:
  • CMD3A
  • EFE2
  • EFE
  • TAZ

MANE transcript

NM_000116.5

Inheritance

XL

ClinVar variants

P:115U:216B:125

Top phenotype

Barth syndrome (3-Methylglutaconic aciduria, type II)

gnomAD constraint

pLI —, LoF o/e 0.15

Max pathogenic AF

—

Genomic locus

chrX:154,411,524-154,421,726

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~10.2 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

Barth syndromeDEFINITIVE

Inheritance Pattern: XL

Disease ID:MONDO:0010543

Submitter: G2P

Barth syndromeDEFINITIVE

Inheritance Pattern: XL

Disease ID:MONDO:0010543

Submitter: ClinGen

*TAFAZZIN*, historically known as G4.5, was first reported in relation to X-linked Barth syndrome in 1996 (Bione et al., PMID: 8630491). This disorder was formally characterized by Barth et al. in 1983 as an X-linked mitochondrial disease with the characteristic phenotypes of dilated cardiomyopathy, skeletal myopathy, neutropenia, and and prepubertal growth delay (PMID:25299040). Barth syndrome can prenatally present as fetal DCM, hydrops, severe fetal decompensation necessitating emergency delivery and stillbirth, as seen in molecularly confirmed cases (PMID: 20812380). Additionally male miscarriages, stillbirth have been noted in multiple Barth syndrome families (PMIDs: 20812380, 27124939, 10484795, 28183324). Cardiomyopathy commonly presents before 5 years of age as DCM with or without endocardial fibroelastosis and/or left ventricular noncompaction, and in combination with other features of Barth syndrome. Hypertrophic cardiomyopathy has also been reported and probands are at an increased risk of heart failure, arrhythmias and sudden death (PMIDs: 16847078, 26337810, 9382097). Although multisystemic presentations predominate, isolated cardiac presentations have also been described (PMID: 9382097). Barth syndrome can be diagnosed in male probands either biochemically, with an increased monolysocardiolipin:cardiolipin ratio or molecularly, with the identification of a hemizygous pathogenic variant in TAFAZZIN. Elevated urinary and plasma 3-methylglutaconate and urinary 3-methylglutarate) can be observed. (GeneReviews: NBK247162). Affected females have been reported rarely. Over 100 variants, mostly premature termination or splice-altering with some missense, have been reported in humans to date. Evidence supporting this gene-disease relationship includes case-level data, segregation data, and experimental data. Variants in this gene were curated from eleven probands in four publications (PMIDs: 8630491, 16906470, 10484795, 23031367) and segregated with disease in three of those families. This combination of significant segregation (Summed LOD score: 9.22) and high frequency of predicted/proven null variants reaches the maximum score for genetic evidence with more evidence available in the literature. The mechanism for disease is hemizygous loss-of-function, with loss of tafazzin enzymatic activity as a phospholipid acyltransferase affecting the maturation of the protein cardiolipin. Cardiolipin is an essential part of the mitochondrial membrane for mitochondrial morphology and function, as well as having other functions in cardiac function, apoptosis, autophagy, cell cycle regulation, and Fe-S cluster biosynthesis (PMID: 23200781). Dysregulation causes a cascade of effects including respiratory chain dysfunction, extensive mitochondrial aberrations, ultrastructural muscle damage, and destabilized super-complexes and metabolic complexes causing the observed phenotypes in Barth syndrome. This gene-disease association is supported by tafazzin and cardiolipin's biochemical functions and altered tafazzin enzymatic activity in patient fibroblasts. Several studies have been performed on "knockdown" mouse models expressing siRNAs to inhibit TAZ mRNA production when fed varying amounts of doxycycline. The results range in severity from premature lethality due to cardiomyopathy to relatively minor skeletal and cardiac abnormalities, recapitulating the phenotypes observed in human probands. Finally, a rescue performed on the same mice via AAV vectors with human TAZ cDNA restored cardiac and skeletal function of the mice to near WT levels while also improving the mitochondial abnormalities observed. In summary, *TAFAZZIN* is definitively associated with x-linked Barth syndrome. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. The classification was approved by the General IEM GCEP on December 8, 2022, and the summary was updated to include details on the cardiac presentation from the ClinGen Hereditary Cardiovascular Disease (HCVD) GCEP on Feb 22, 2026.

Barth syndromeSTRONG

Inheritance Pattern: XL

Disease ID:MONDO:0010543

Submitter: PanelApp Australia

Barth syndromeSTRONG

Inheritance Pattern: XL

Disease ID:MONDO:0010543

Submitter: Labcorp Genetics (formerly Invitae)

Clinical Genomic Database (CGD)

Barth syndrome (3-Methylglutaconic aciduria, type II)XL

Manifestation: Allergy/Immunology/Infectious; Biochemical; Cardiovascular; Craniofacial; Musculoskeletal; Neurologic

Intervention: Allergy/Immunology/Infectious; Cardiovascular

Rationale: Surveillance for cardiomyopathy and early medical treatment may reduce morbidity; in some individuals, early cardiac transplant may be necessary; Individuals can also have neutropenia, and prophylaxis against infections, with early and aggressive management of infections may be beneficial

Refs: 6142097; 2372897; 1998334; 1719174; 8434619; 8487269; 7616547; 8630491; 9332651; 9382097; 9382096; 9345098; 11238270; 11735032; 12468278; 12032589; 15098233; 7394203; 19648820; 20301486; 20812380; 22410210; 21987083Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to TAFAZZIN variants in ClinVar

13 Conditions Cataloged
3-Methylglutaconic aciduria type 2Total: 490
not providedTotal: 98
Cardiovascular phenotypeTotal: 88
not specifiedTotal: 37
Primary dilated cardiomyopathyTotal: 17
Endocardial fibroelastosisTotal: 12
TAFAZZIN-related disorderTotal: 10
CardiomyopathyTotal: 7

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_000116.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
16
clinvar
118
clinvar
135
missense
5
clinvar
27
clinvar
168
clinvar
7
clinvar
207
nonsense
12
clinvar
11
clinvar
4
clinvar
27
start loss
2
clinvar
2
frameshift
20
clinvar
13
clinvar
5
clinvar
38
splice donor/acceptor (+/-2bp)
10
clinvar
16
clinvar
21
clinvar
47
Total47682161250456

Highest pathogenic variant AF is 0.000004570551

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 101 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_000116.5RefSeqNP_000107.111MANE Select
ENST00000601016.6EnsemblENSP00000469981.111MANE Select
NM_001303465.2RefSeqNP_001290394.110Standard
NM_001410698.1RefSeqNP_001397627.110Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
tazDanio rerio

Structure: post-vent region

Quality: increased curvature

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Glycerophospholipid metabolism - Homo sapiens (human)
  • Metabolism of lipids
  • Metabolism of proteins
  • Metabolism
  • Acyl chain remodeling of CL

Biological Process

  • muscle contraction
  • inner mitochondrial membrane organization
  • heart development
  • skeletal muscle tissue development
  • regulation of gene expression

Molecular Function

  • 1-acylglycerol-3-phosphate O-acyltransferase activity
  • O-acyltransferase activity
  • 1-acylglycerophosphocholine O-acyltransferase activity

Cellular Component

  • nucleus
  • mitochondrion
  • mitochondrial inner membrane
  • cytosol
  • integral component of membrane

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000299328
Coding exons
11
Length
10212
Individuals with no LoFs
120450
Homozygous LoFs
0
Heterozygous LoFs
1
Defined
120451
p
0.00000415
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense2.21541230.4390.00001001924
Missense (PolyPhen)738.8420.18022544
Synonymous0.9294048.20.8300.00000389536
Loss of Function2.82213.00.1548.98e-7206

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000780.000064rare
Latino/Admixed American00.0absent
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)00.0absent
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Some isoforms may be involved in cardiolipin (CL) metabolism. {ECO:0000269|PubMed:12930833, ECO:0000269|PubMed:19164547}.;
Disease
DISEASE: Barth syndrome (BTHS) [MIM:302060]: An X-linked disease characterized by dilated cardiomyopathy with endocardial fibroelastosis, a predominantly proximal skeletal myopathy, growth retardation, neutropenia, and organic aciduria, particularly excess of 3-methylglutaconic acid. Additional features include hypertrophic cardiomyopathy, isolated left ventricular non- compaction, ventricular arrhythmia, motor delay, poor appetite, fatigue and exercise intolerance, hypoglycemia, lactic acidosis, hyperammonemia, and dramatic late catch-up growth after growth delay throughout childhood. {ECO:0000269|PubMed:11238270, ECO:0000269|PubMed:12032589, ECO:0000269|PubMed:9382096, ECO:0000269|PubMed:9382097}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.193

Intolerance Scores

LoFtool
0.0874
RVIS EVS
0.08
RVIS percentile EVS
59.76

Essentials

Essential (CRISPR)
E
Essential (CRISPR2)
S
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.897

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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