TAFAZZIN
protein-codingtafazzin, phospholipid-lysophospholipid transacylase
Gene summary
This gene encodes a protein that is expressed at high levels in cardiac and skeletal muscle. Mutations in this gene have been associated with a number of clinical disorders including Barth syndrome, dilated cardiomyopathy (DCM), hypertrophic DCM, endocardial fibroelastosis, and left ventricular noncompaction (LVNC). Multiple transcript variants encoding different isoforms have been described. A long form and a short form of each of these isoforms is produced; the short form lacks a hydrophobic leader sequence and may exist as a cytoplasmic protein rather than being membrane-bound. Other alternatively spliced transcripts have been described but the full-length nature of all these transcripts is not known. [provided by RefSeq, Jul 2008]
- CMD3A
- EFE2
- EFE
- TAZ
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~10.2 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: XL
Disease ID:MONDO:0010543
Submitter: G2P
Inheritance Pattern: XL
Disease ID:MONDO:0010543
Submitter: ClinGen
*TAFAZZIN*, historically known as G4.5, was first reported in relation to X-linked Barth syndrome in 1996 (Bione et al., PMID: 8630491). This disorder was formally characterized by Barth et al. in 1983 as an X-linked mitochondrial disease with the characteristic phenotypes of dilated cardiomyopathy, skeletal myopathy, neutropenia, and and prepubertal growth delay (PMID:25299040). Barth syndrome can prenatally present as fetal DCM, hydrops, severe fetal decompensation necessitating emergency delivery and stillbirth, as seen in molecularly confirmed cases (PMID: 20812380). Additionally male miscarriages, stillbirth have been noted in multiple Barth syndrome families (PMIDs: 20812380, 27124939, 10484795, 28183324). Cardiomyopathy commonly presents before 5 years of age as DCM with or without endocardial fibroelastosis and/or left ventricular noncompaction, and in combination with other features of Barth syndrome. Hypertrophic cardiomyopathy has also been reported and probands are at an increased risk of heart failure, arrhythmias and sudden death (PMIDs: 16847078, 26337810, 9382097). Although multisystemic presentations predominate, isolated cardiac presentations have also been described (PMID: 9382097). Barth syndrome can be diagnosed in male probands either biochemically, with an increased monolysocardiolipin:cardiolipin ratio or molecularly, with the identification of a hemizygous pathogenic variant in TAFAZZIN. Elevated urinary and plasma 3-methylglutaconate and urinary 3-methylglutarate) can be observed. (GeneReviews: NBK247162). Affected females have been reported rarely. Over 100 variants, mostly premature termination or splice-altering with some missense, have been reported in humans to date. Evidence supporting this gene-disease relationship includes case-level data, segregation data, and experimental data. Variants in this gene were curated from eleven probands in four publications (PMIDs: 8630491, 16906470, 10484795, 23031367) and segregated with disease in three of those families. This combination of significant segregation (Summed LOD score: 9.22) and high frequency of predicted/proven null variants reaches the maximum score for genetic evidence with more evidence available in the literature. The mechanism for disease is hemizygous loss-of-function, with loss of tafazzin enzymatic activity as a phospholipid acyltransferase affecting the maturation of the protein cardiolipin. Cardiolipin is an essential part of the mitochondrial membrane for mitochondrial morphology and function, as well as having other functions in cardiac function, apoptosis, autophagy, cell cycle regulation, and Fe-S cluster biosynthesis (PMID: 23200781). Dysregulation causes a cascade of effects including respiratory chain dysfunction, extensive mitochondrial aberrations, ultrastructural muscle damage, and destabilized super-complexes and metabolic complexes causing the observed phenotypes in Barth syndrome. This gene-disease association is supported by tafazzin and cardiolipin's biochemical functions and altered tafazzin enzymatic activity in patient fibroblasts. Several studies have been performed on "knockdown" mouse models expressing siRNAs to inhibit TAZ mRNA production when fed varying amounts of doxycycline. The results range in severity from premature lethality due to cardiomyopathy to relatively minor skeletal and cardiac abnormalities, recapitulating the phenotypes observed in human probands. Finally, a rescue performed on the same mice via AAV vectors with human TAZ cDNA restored cardiac and skeletal function of the mice to near WT levels while also improving the mitochondial abnormalities observed. In summary, *TAFAZZIN* is definitively associated with x-linked Barth syndrome. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. The classification was approved by the General IEM GCEP on December 8, 2022, and the summary was updated to include details on the cardiac presentation from the ClinGen Hereditary Cardiovascular Disease (HCVD) GCEP on Feb 22, 2026.
Inheritance Pattern: XL
Disease ID:MONDO:0010543
Submitter: PanelApp Australia
Inheritance Pattern: XL
Disease ID:MONDO:0010543
Submitter: Labcorp Genetics (formerly Invitae)
Clinical Genomic Database (CGD)
Manifestation: Allergy/Immunology/Infectious; Biochemical; Cardiovascular; Craniofacial; Musculoskeletal; Neurologic
Intervention: Allergy/Immunology/Infectious; Cardiovascular
Rationale: Surveillance for cardiomyopathy and early medical treatment may reduce morbidity; in some individuals, early cardiac transplant may be necessary; Individuals can also have neutropenia, and prophylaxis against infections, with early and aggressive management of infections may be beneficial
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to TAFAZZIN variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_000116.5. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 16 | 118 | 135 | ||
| missense | 5 | 27 | 168 | 7 | 207 | |
| nonsense | 12 | 11 | 4 | 27 | ||
| start loss | 2 | 2 | ||||
| frameshift | 20 | 13 | 5 | 38 | ||
| splice donor/acceptor (+/-2bp) | 10 | 16 | 21 | 47 | ||
| Total | 47 | 68 | 216 | 125 | 0 | 456 |
Highest pathogenic variant AF is 0.000004570551
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_000107.1 | 11 | MANE Select | |
| Ensembl | ENSP00000469981.1 | 11 | MANE Select | |
| RefSeq | NP_001290394.1 | 10 | Standard | |
| RefSeq | NP_001397627.1 | 10 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| taz | Danio rerio | Structure: post-vent region Quality: increased curvature abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Glycerophospholipid metabolism - Homo sapiens (human)
- Metabolism of lipids
- Metabolism of proteins
- Metabolism
- Acyl chain remodeling of CL
Biological Process
- muscle contraction
- inner mitochondrial membrane organization
- heart development
- skeletal muscle tissue development
- regulation of gene expression
Molecular Function
- 1-acylglycerol-3-phosphate O-acyltransferase activity
- O-acyltransferase activity
- 1-acylglycerophosphocholine O-acyltransferase activity
Cellular Component
- nucleus
- mitochondrion
- mitochondrial inner membrane
- cytosol
- integral component of membrane
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000299328
- Coding exons
- 11
- Length
- 10212
- Individuals with no LoFs
- 120450
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 1
- Defined
- 120451
- p
- 0.00000415
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 2.21 | 54 | 123 | 0.439 | 0.0000100 | 1924 |
| Missense (PolyPhen) | 7 | 38.842 | 0.18022 | 544 | ||
| Synonymous | 0.929 | 40 | 48.2 | 0.830 | 0.00000389 | 536 |
| Loss of Function | 2.82 | 2 | 13.0 | 0.154 | 8.98e-7 | 206 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.000078 | 0.000064 | rare |
| Latino/Admixed American | 0 | 0.0 | absent |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0 | 0.0 | absent |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Some isoforms may be involved in cardiolipin (CL) metabolism. {ECO:0000269|PubMed:12930833, ECO:0000269|PubMed:19164547}.;
- Disease
- DISEASE: Barth syndrome (BTHS) [MIM:302060]: An X-linked disease characterized by dilated cardiomyopathy with endocardial fibroelastosis, a predominantly proximal skeletal myopathy, growth retardation, neutropenia, and organic aciduria, particularly excess of 3-methylglutaconic acid. Additional features include hypertrophic cardiomyopathy, isolated left ventricular non- compaction, ventricular arrhythmia, motor delay, poor appetite, fatigue and exercise intolerance, hypoglycemia, lactic acidosis, hyperammonemia, and dramatic late catch-up growth after growth delay throughout childhood. {ECO:0000269|PubMed:11238270, ECO:0000269|PubMed:12032589, ECO:0000269|PubMed:9382096, ECO:0000269|PubMed:9382097}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.193
Intolerance Scores
- LoFtool
- 0.0874
- RVIS EVS
- 0.08
- RVIS percentile EVS
- 59.76
Essentials
- Essential (CRISPR)
- E
- Essential (CRISPR2)
- S
- Essential (gene trap)
- N
- Indispensability pred.
- E
- Indispensability score
- 0.897
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |