TAS2R10

taste 2 receptor member 10, the group of Taste 2 receptors

Basic information

Region (hg38): 12:10825219-10826358

Links

ENSG00000121318 ∙ NCBI:50839 ∙ OMIM:604791 ∙ HGNC:14918 ∙ Uniprot:Q9NYW0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TAS2R10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TAS2R10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			18	2		20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	18	2	0

Variants in TAS2R10

This is a list of pathogenic ClinVar variants found in the TAS2R10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-10825426-T-A		not specified	Uncertain significance (Nov 08, 2021)
12-10825480-T-C		not specified	Uncertain significance (May 15, 2024)
12-10825578-G-T		not specified	Uncertain significance (Feb 21, 2024)
12-10825616-G-C		not specified	Uncertain significance (Feb 27, 2024)
12-10825644-G-A		not specified	Likely benign (Mar 30, 2024)
12-10825660-T-A		not specified	Uncertain significance (Jul 06, 2021)
12-10825677-A-G		not specified	Uncertain significance (Sep 01, 2021)
12-10825714-A-G		not specified	Uncertain significance (Mar 16, 2022)
12-10825728-C-G		not specified	Uncertain significance (Aug 12, 2021)
12-10825744-T-C		not specified	Likely benign (Dec 06, 2021)
12-10825837-C-G		not specified	Likely benign (Jul 15, 2021)
12-10825935-T-G		not specified	Uncertain significance (Dec 21, 2023)
12-10825977-A-G		not specified	Uncertain significance (Mar 05, 2024)
12-10826038-C-T		not specified	Uncertain significance (Feb 06, 2023)
12-10826061-A-G		not specified	Uncertain significance (Jun 18, 2024)
12-10826089-T-C		not specified	Uncertain significance (Nov 22, 2021)
12-10826103-A-T		not specified	Uncertain significance (Sep 22, 2021)
12-10826115-A-T		not specified	Uncertain significance (Jun 18, 2024)
12-10826125-C-T		not specified	Uncertain significance (Feb 28, 2023)
12-10826185-G-C		not specified	Uncertain significance (Aug 09, 2021)
12-10826233-C-A		not specified	Uncertain significance (Jul 25, 2023)
12-10826257-C-T		not specified	Uncertain significance (Mar 14, 2023)
12-10826263-G-A		not specified	Uncertain significance (Apr 06, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TAS2R10	protein_coding	protein_coding	ENST00000240619	1	1042

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.654	184	161	1.15	0.00000759	2033
Missense in Polyphen		44	39.13	1.1245		579
Synonymous	-1.28	70	57.6	1.21	0.00000282	585
Loss of Function

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish
East Asian
Finnish
European (Non-Finnish)
Middle Eastern
South Asian
Other

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Gustducin-coupled strychnine receptor implicated in the perception of bitter compounds in the oral cavity and the gastrointestinal tract. Signals through PLCB2 and the calcium- regulated cation channel TRPM5. {ECO:0000269|PubMed:15759003}.
• Pathway: Taste transduction - Homo sapiens (human);Signaling by GPCR;Signal Transduction;Class C/3 (Metabotropic glutamate/pheromone receptors);GPCR ligand binding;G alpha (i) signalling events;GPCR downstream signalling (Consensus)

Recessive Scores

• pRec: 0.0828

Intolerance Scores

• loftool: 0.633
• rvis_EVS: -0.16
• rvis_percentile_EVS: 41.91

Haploinsufficiency Scores

• pHI: 0.0838
• hipred: N
• hipred_score: 0.158
• ghis: 0.382

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.00796

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tas2r114

Gene ontology

• Biological process: detection of chemical stimulus involved in sensory perception of bitter taste;G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;taste receptor activity;bitter taste receptor activity