TAS2R39

taste 2 receptor member 39, the group of Taste 2 receptors

Basic information

Region (hg38): 7:143183418-143184435

Links

ENSG00000236398 ∙ NCBI:259285 ∙ ∙ HGNC:18886 ∙ Uniprot:P59534 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TAS2R39 gene.

• Inborn genetic diseases (9 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TAS2R39 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			8	1		9
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	8	1	0

Variants in TAS2R39

This is a list of pathogenic ClinVar variants found in the TAS2R39 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-143183430-A-C		not specified	Uncertain significance (Dec 13, 2021)
7-143183488-C-A		not specified	Uncertain significance (May 18, 2023)
7-143183599-G-A		not specified	Uncertain significance (Jul 19, 2023)
7-143183713-A-G		not specified	Uncertain significance (Oct 14, 2023)
7-143183837-C-T		not specified	Uncertain significance (Feb 17, 2024)
7-143183878-A-G		not specified	Uncertain significance (Jul 20, 2022)
7-143183939-T-G		not specified	Uncertain significance (Aug 11, 2022)
7-143183988-C-G		not specified	Uncertain significance (Sep 01, 2021)
7-143184040-G-A		not specified	Likely benign (Dec 06, 2023)
7-143184115-C-A		not specified	Likely benign (Jun 08, 2022)
7-143184226-C-T		not specified	Uncertain significance (Jan 09, 2024)
7-143184248-C-T		not specified	Uncertain significance (Dec 21, 2022)
7-143184339-C-G		not specified	Uncertain significance (Sep 21, 2023)
7-143184388-C-T		not specified	Uncertain significance (Nov 19, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TAS2R39	protein_coding	protein_coding	ENST00000446620	1	1017

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.08e-7	0.0552	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.135	170	175	0.971	0.00000817	2246
Missense in Polyphen		36	39.36	0.91463		584
Synonymous	0.0934	67	68.0	0.986	0.00000345	670
Loss of Function	-1.10	9	6.08	1.48	2.56e-7	82

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Receptor that may play a role in the perception of bitterness and is gustducin-linked. May play a role in sensing the chemical composition of the gastrointestinal content. The activity of this receptor may stimulate alpha gustducin, mediate PLC-beta-2 activation and lead to the gating of TRPM5 (By similarity). {ECO:0000250}.
• Pathway: Taste transduction - Homo sapiens (human);Signaling by GPCR;Signal Transduction;Class C/3 (Metabotropic glutamate/pheromone receptors);GPCR ligand binding;G alpha (i) signalling events;GPCR downstream signalling (Consensus)

Intolerance Scores

• loftool: 0.843
• rvis_EVS: 1.26
• rvis_percentile_EVS: 93.53

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0161

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tas2r139

Gene ontology

• Biological process: detection of chemical stimulus involved in sensory perception of bitter taste;G protein-coupled receptor signaling pathway
• Cellular component: plasma membrane;integral component of membrane
• Molecular function: G protein-coupled receptor activity;bitter taste receptor activity