GeneBe

TENM2-AS1

TENM2 antisense RNA 2, the group of Antisense RNAs

Basic information

Region (hg38): 5:168229570-168269491

Links

ENSG00000253978 ∙ NCBI:101927862 ∙ ∙ HGNC:56066 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TENM2-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TENM2-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
68
clinvar
2
clinvar
3
clinvar
 73
Total 0 0 68 2 3

Variants in TENM2-AS1

This is a list of pathogenic ClinVar variants found in the TENM2-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
5-168244457-G-A not specified Uncertain significance (Aug 01, 2024)2301145
5-168244493-G-A not specified Uncertain significance (Jun 26, 2024)3454846
5-168244618-G-A not specified Uncertain significance (Oct 19, 2024)3454862
5-168244657-C-T not specified Uncertain significance (Dec 08, 2023)3175867
5-168244663-G-A not specified Uncertain significance (Jan 24, 2024)3175868
5-168244674-G-A not specified Uncertain significance (Sep 14, 2022)2220151
5-168246785-G-A not specified Uncertain significance (Oct 29, 2024)3454820
5-168246817-C-T not specified Uncertain significance (Nov 25, 2024)3454835
5-168246917-A-G not specified Uncertain significance (May 24, 2023)2551015
5-168246920-C-T not specified Uncertain significance (Jun 25, 2024)3454822
5-168246948-C-T Benign (Jul 27, 2017)780964
5-168246949-G-A not specified Uncertain significance (Jun 13, 2024)3325311
5-168246974-T-C not specified Uncertain significance (Oct 01, 2024)3454860
5-168247051-G-A not specified Uncertain significance (Jan 05, 2022)2369131
5-168247068-C-G not specified Uncertain significance (Jan 31, 2024)3175871
5-168247135-C-T not specified Uncertain significance (Jan 03, 2024)3175872
5-168247153-G-C not specified Uncertain significance (Sep 27, 2021)2345718
5-168247234-C-T not specified Uncertain significance (Apr 25, 2023)2510086
5-168247279-G-A not specified Uncertain significance (Jan 17, 2023)2459586
5-168247291-C-T not specified Uncertain significance (Nov 12, 2021)2260692
5-168247401-C-G not specified Uncertain significance (Nov 14, 2024)3454867
5-168247445-G-A not specified Uncertain significance (Oct 12, 2022)2318613
5-168247485-G-A not specified Uncertain significance (Dec 09, 2024)3454874
5-168247496-T-C not specified Uncertain significance (Aug 27, 2024)3454856
5-168247538-A-G not specified Uncertain significance (Oct 10, 2023)3175873

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP