TEPP

testis, prostate and placenta expressed

Basic information

Region (hg38): 16:57976434-57988116

Links

ENSG00000159648 ∙ NCBI:374739 ∙ OMIM:610264 ∙ HGNC:33745 ∙ Uniprot:Q6URK8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TEPP gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TEPP gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20			20
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			3	1		4
Total	0	0	23	1	0

Variants in TEPP

This is a list of pathogenic ClinVar variants found in the TEPP region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-57976481-G-T		not specified	Uncertain significance (Feb 23, 2023)
16-57976505-C-G		not specified	Uncertain significance (May 01, 2024)
16-57976518-T-C		not specified	Uncertain significance (Jan 04, 2022)
16-57976530-G-A		not specified	Likely benign (Feb 03, 2022)
16-57976536-C-T		not specified	Uncertain significance (Feb 06, 2023)
16-57976595-C-T		not specified	Uncertain significance (Jun 05, 2024)
16-57977823-C-T		not specified	Uncertain significance (Dec 13, 2022)
16-57977824-G-A		not specified	Uncertain significance (Aug 30, 2022)
16-57977850-G-A		not specified	Uncertain significance (Jan 29, 2024)
16-57977902-G-A		not specified	Uncertain significance (Jan 31, 2023)
16-57977908-G-A		not specified	Uncertain significance (Jun 29, 2022)
16-57977995-G-C		not specified	Uncertain significance (Feb 09, 2022)
16-57978034-G-A		not specified	Uncertain significance (Jun 07, 2023)
16-57984329-C-T		not specified	Uncertain significance (Feb 17, 2022)
16-57984706-G-T		not specified	Uncertain significance (Apr 05, 2023)
16-57984749-G-C		not specified	Uncertain significance (Feb 10, 2022)
16-57984777-G-A		not specified	Uncertain significance (Dec 14, 2023)
16-57984778-G-A		not specified	Uncertain significance (Mar 28, 2023)
16-57985209-A-G		not specified	Uncertain significance (Aug 02, 2022)
16-57985220-G-C		not specified	Uncertain significance (Jul 25, 2023)
16-57985236-A-G		not specified	Uncertain significance (Jun 27, 2022)
16-57985459-C-T		not specified	Uncertain significance (Apr 28, 2022)
16-57985477-C-G		not specified	Uncertain significance (Nov 09, 2022)
16-57987397-C-T		not specified	Uncertain significance (Jan 27, 2022)
16-57987398-G-A		not specified	Uncertain significance (May 13, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TEPP	protein_coding	protein_coding	ENST00000290871	8	11682

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000232	0.926	125709	0	39	125748	0.000155

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.0972	169	173	0.979	0.00000912	1903
Missense in Polyphen		54	56.896	0.94911		635
Synonymous	-0.517	76	70.5	1.08	0.00000381	599
Loss of Function	1.61	8	14.7	0.546	6.28e-7	169

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000180	0.000180
Ashkenazi Jewish	0.00150	0.00149
East Asian	0.000109	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000814	0.0000791
Middle Eastern	0.000109	0.000109
South Asian	0.000262	0.000261
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.894
• rvis_EVS: -0.07
• rvis_percentile_EVS: 48.54

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.123
• ghis: 0.472

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.142

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tepp
• Phenotype: normal phenotype

Gene ontology

• Cellular component: extracellular region