TET2-AS1

TET2 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 4:105171354-105353011

Links

ENSG00000251586 ∙ ∙ ∙ HGNC:41125 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TET2-AS1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TET2-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in TET2-AS1

This is a list of pathogenic ClinVar variants found in the TET2-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
4-105233833-TATAGATAG-T		not specified	Benign (Jan 24, 2024)
4-105233951-G-A			Likely benign (Apr 24, 2023)
4-105233957-A-G			Likely benign (Jul 30, 2023)
4-105233963-C-T			Likely benign (Sep 05, 2023)
4-105233964-C-G			Likely benign (Aug 09, 2022)
4-105233978-C-T			Likely benign (Jun 15, 2018)
4-105233979-A-C			Benign/Likely benign (Jan 29, 2024)
4-105234002-A-C			Likely benign (Sep 01, 2023)
4-105234016-G-T			Uncertain significance (Dec 27, 2023)
4-105234022-C-G			Uncertain significance (Sep 15, 2022)
4-105234028-C-G		not specified	Benign (Jan 31, 2024)
4-105234037-C-T			Uncertain significance (Jan 25, 2022)
4-105234042-C-T		not specified	Benign (Jan 31, 2024)
4-105234055-G-T			Uncertain significance (Jun 02, 2022)
4-105234058-C-T			Uncertain significance (Jun 07, 2022)
4-105234113-C-T			Likely benign (Dec 09, 2023)
4-105234122-T-C			Likely benign (Jul 19, 2023)
4-105234138-A-T			Uncertain significance (Jul 16, 2023)
4-105234139-T-C		not specified	not provided (Sep 19, 2013)
4-105234182-A-G			Likely benign (Sep 13, 2023)
4-105234193-G-T			Uncertain significance (Dec 09, 2023)
4-105234204-T-C			Uncertain significance (Nov 11, 2022)
4-105234215-T-C		TET2-related disorder	Likely benign (Aug 18, 2021)
4-105234228-C-T			Uncertain significance (Feb 20, 2022)
4-105234229-G-GCA			Uncertain significance (Feb 20, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP