THAP7

THAP domain containing 7, the group of THAP domain containing

Basic information

Region (hg38): 22:20999104-21002196

Links

ENSG00000184436 ∙ NCBI:80764 ∙ OMIM:609518 ∙ HGNC:23190 ∙ Uniprot:Q9BT49 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the THAP7 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the THAP7 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			23			23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	23	0	0

Variants in THAP7

This is a list of pathogenic ClinVar variants found in the THAP7 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
22-20999921-C-A		not specified	Uncertain significance (Mar 15, 2024)
22-20999959-C-T		not specified	Uncertain significance (May 27, 2022)
22-20999968-C-T		not specified	Uncertain significance (Dec 19, 2023)
22-20999975-G-A		not specified	Uncertain significance (Aug 23, 2021)
22-21000004-C-T		not specified	Uncertain significance (Feb 22, 2023)
22-21000010-C-T		not specified	Uncertain significance (Dec 28, 2023)
22-21000050-C-T		not specified	Uncertain significance (Nov 30, 2022)
22-21000053-T-C		not specified	Uncertain significance (Dec 13, 2022)
22-21000059-G-A		not specified	Uncertain significance (Jun 22, 2021)
22-21000074-C-T		not specified	Uncertain significance (Sep 25, 2023)
22-21000085-C-T		not specified	Uncertain significance (Jun 11, 2024)
22-21000086-G-A		not specified	Uncertain significance (Sep 07, 2022)
22-21000103-C-T		not specified	Uncertain significance (Mar 08, 2024)
22-21000148-G-A		not specified	Uncertain significance (Oct 12, 2021)
22-21000190-C-T		not specified	Uncertain significance (Jan 24, 2024)
22-21000191-G-A		not specified	Uncertain significance (Sep 21, 2023)
22-21000197-C-T		not specified	Uncertain significance (Feb 10, 2022)
22-21000260-C-T		not specified	Uncertain significance (Feb 23, 2023)
22-21000272-C-G		not specified	Uncertain significance (Mar 16, 2022)
22-21000383-C-A		not specified	Uncertain significance (May 28, 2024)
22-21000385-G-A		not specified	Uncertain significance (Aug 02, 2021)
22-21000391-G-C		not specified	Uncertain significance (Jan 09, 2024)
22-21000425-C-T		not specified	Uncertain significance (Dec 14, 2021)
22-21000753-T-C		not specified	Uncertain significance (Jul 20, 2021)
22-21001323-C-A		not specified	Uncertain significance (May 18, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
THAP7	protein_coding	protein_coding	ENST00000215742	4	3093

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0133	0.958	125738	0	8	125746	0.0000318

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.385	171	186	0.921	0.0000114	1917
Missense in Polyphen		38	53.274	0.7133		531
Synonymous	-2.20	99	74.8	1.32	0.00000401	658
Loss of Function	1.90	5	12.2	0.411	6.62e-7	137

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000125	0.000123
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000545	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.0000264	0.0000264
Middle Eastern	0.0000545	0.0000544
South Asian	0.0000327	0.0000327
Other	0.000166	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Chromatin-associated, histone tail-binding protein that represses transcription via recruitment of HDAC3 and nuclear hormone receptor corepressors. {ECO:0000269|PubMed:15561719}.

Recessive Scores

• pRec: 0.110

Haploinsufficiency Scores

• pHI: 0.371
• hipred: Y
• hipred_score: 0.557
• ghis: 0.420

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: H
• gene_indispensability_pred: E
• gene_indispensability_score: 1.00

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Thap7

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II;negative regulation of transcription, DNA-templated
• Cellular component: nucleus;chromosome;nuclear speck;nuclear membrane;intracellular membrane-bounded organelle
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;identical protein binding;metal ion binding;protein N-terminus binding;C2H2 zinc finger domain binding