THSD4

protein-coding

thrombospondin type 1 domain containing 4, the group of ADAMTS like

Gene summary

Predicted to enable hydrolase activity. Predicted to be an extracellular matrix structural constituent. Involved in microfibril assembly. Located in microfibril. Implicated in asthma and thoracic aortic aneurysm. [provided by Alliance of Genome Resources, Jun 2026]

MANE transcript

NM_024817.3

Inheritance

AD

ClinVar variants

P:8U:193B:37

Top phenotype

Aortic aneurysm, familial thoracic 12

gnomAD constraint

pLI —, LoF o/e 0.39

Max pathogenic AF

—

Genomic locus

chr15:71,096,952-71,783,383

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~686.4 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

familial thoracic aortic aneurysm and aortic dissectionLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0019625

Submitter: ClinGen

The THSD4 gene encodes for ADAMTS-like protein 6 (ADAMTSL6), an extracellular matrix protein known to promote fibrillin-1 matrix assembly. *THSD4* was first reported in relation to autosomal dominant familial thoracic aortic aneurysm and aortic dissection (FTAAD) in 2021 by Elbitar et. al. (PMID 32855533). Evidence supporting this gene-disease relationship includes case-level data and experimental data. Six THSD4 (NM_024817) variants (one frameshift, two nonsense, two missense variants, and one in-frame duplication) that have been reported in six probands are included in this curation (PMID 32855533, 41999216). One in-frame duplication, *THSD4*:c.137_145dup (p.Asp46_Gly48dup), one frameshift variant, *THSD4*:c.1402del (p.Ala468GlnfsX45), and one nonsense variant *THSD4*:c.740del (p.Leu247Ter), were shown to segregate with disease in families (PMIDs 32855533); however, there were insufficient number of segregations to qualify as scorable evidence as per the ClinGen Gene-Disease Validity Standard Operating Procedures (version 12). The evidentiary value of the variants, *THSD4*:c.2258G>A (p.Gly753Asp) and *THSD4*c.2341C>T (p.Arg781Trp) were reduced due to high minor allele frequency. Functional studies completed for the two PTC variants and the two missense variants demonstrated haploinsufficiency or impaired assembly (disorganization of the aortic media) of fibrillin-1 microfibrils (PMID 32855533). An additional nonsense variant, *THSD4*:c.1862G>A (p.Trp621Ter), has been reported in a 61 year old male with a history of annuloaortic ectasia and bicuspid aortic valve and is predicted to result in loss of function through premature termination, consistent with the *THSD4* haploinsufficiency mechanism which has been proposed for *THSD4* in heritable thoracic aortic disease (PMID 41999216). This gene-disease relationship is further supported by experimental data in the form of tissue expression, biochemical/functional assays, and mouse models. Bulk tissue gene expression data from the GTEx Portal indicates *THSD4* is expressed in arteries/aorta (PMID: 23715323). Protein interaction studies demonstrate ADAMTSL-6 is a novel microfibril-associated protein that binds directly to fibrillin-1 and promotes assembly of fibrillin-1 microfibrils (PMID 19940141). Thsd4+/− mouse models revealed typical medial degeneration and diffuse disruption of extracellular matrix in aortic samples (PMID 32855533). Although the total evidence score is 9.6 points, the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Gene Curation Expert Panel opted to downgrade the classification from Moderate to Limited on the basis of recent unpublished data showing multiple observations of nonpenetrance of an aortic disease phenotype among families with the TSHD4 variant and, even more importantly, non-segregation of the familial TSHD4 variant in family members with thoracic aortic aneurysm/dissection. These observations question the monogenic character of *THSD4* in relation to FTAAD (Mèlanie H.A.M. Perik, 2024, University of Antwerp, manuscript in preparation for publication and PhD thesis, https://hdl.handle.net/10067/2079210151162165141). In summary, there is limited evidence to support this gene-disease relationship. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Gene Curation Expert Panel on the meeting date September 4, 2026 (SOP Version 12).

familial thoracic aortic aneurysm and aortic dissectionLIMITED

Inheritance Pattern: AD

Disease ID:MONDO:0019625

Submitter: Ambry Genetics

aortic aneurysm, familial thoracic 12STRONG

Inheritance Pattern: AD

Disease ID:MONDO:0030731

Submitter: Labcorp Genetics (formerly Invitae)

familial thoracic aortic aneurysm and aortic dissectionMODERATE

Inheritance Pattern: AD

Disease ID:MONDO:0019625

Submitter: Franklin by Genoox

As part of Thoracic aortic aneurysm and dissection study conducted in France, two unrelated probands were found to carry THSD4 heterozygote mutation which were considered causative. https://doi.org/10.1038/s41436-020-00947-4

Clinical Genomic Database (CGD)

Aortic aneurysm, familial thoracic 12AD

Manifestation: Cardiovascular; Craniofacial; Musculoskeletal; Pulmonary

Intervention: Cardiovascular

Rationale: The condition involves increased risk of aortic aneurysms, and awareness may allow early detection and management

Refs: 32855533Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to THSD4 variants in ClinVar

5 Conditions Cataloged
not specifiedTotal: 178
not providedTotal: 43
Aortic aneurysm, familial thoracic 12Total: 22
Familial thoracic aortic aneurysm and aortic dissectionTotal: 18
THSD4-related disorderTotal: 9

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_024817.3. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
10
clinvar
2
clinvar
13
missense
1
clinvar
185
clinvar
20
clinvar
5
clinvar
211
nonsense
2
clinvar
2
clinvar
4
start loss
0
frameshift
3
clinvar
1
clinvar
4
splice donor/acceptor (+/-2bp)
1
clinvar
5
clinvar
6
Total44193307238

Highest pathogenic variant AF is 0.000006156448

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 16 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_024817.3RefSeqNP_079093.217MANE Select
ENST00000261862.8EnsemblENSP00000261862.817MANE Select
NM_001286429.2RefSeqNP_001273358.112Standard
NM_001394532.1RefSeqNP_001381461.117Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Post-translational protein modification
  • Metabolism of proteins
  • O-glycosylation of TSR domain-containing proteins
  • O-linked glycosylation

Biological Process

  • proteolysis
  • elastic fiber assembly

Molecular Function

  • extracellular matrix structural constituent
  • peptidase activity

Cellular Component

  • microfibril
  • collagen-containing extracellular matrix
  • extracellular exosome

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000355327
Coding exons
17
Length
686432
Individuals with no LoFs
124793
Homozygous LoFs
0
Heterozygous LoFs
62
Defined
124855
p
0.000248
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.3995715980.9540.00003816632
Missense (PolyPhen)133172.120.77271802
Synonymous0.2132362400.9830.00001651979
Loss of Function4.012050.80.3930.00000263561

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.000290.00029rare
Ashkenazi Jewish0.00200.0020notable
East Asian0.000450.00044rare
Finnish00.0absent
European (Non-Finnish)0.000110.00011rare
South Asian0.000260.00026rare
Other0.000660.00066rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Promotes FBN1 matrix assembly. Attenuates TGFB signaling, possibly by accelerating the sequestration of large latent complexes of TGFB or active TGFB by FBN1 microfibril assembly, thereby negatively regulating the expression of TGFB regulatory targets, such as POSTN (By similarity). {ECO:0000250}.;

Recessive Scores

pRec
0.137

Intolerance Scores

LoFtool
0.539
RVIS EVS
-0.94
RVIS percentile EVS
9.41

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.192

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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