THSD4
protein-codingthrombospondin type 1 domain containing 4, the group of ADAMTS like
Gene summary
Predicted to enable hydrolase activity. Predicted to be an extracellular matrix structural constituent. Involved in microfibril assembly. Located in microfibril. Implicated in asthma and thoracic aortic aneurysm. [provided by Alliance of Genome Resources, Jun 2026]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~686.4 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:0019625
Submitter: ClinGen
The THSD4 gene encodes for ADAMTS-like protein 6 (ADAMTSL6), an extracellular matrix protein known to promote fibrillin-1 matrix assembly. *THSD4* was first reported in relation to autosomal dominant familial thoracic aortic aneurysm and aortic dissection (FTAAD) in 2021 by Elbitar et. al. (PMID 32855533). Evidence supporting this gene-disease relationship includes case-level data and experimental data. Six THSD4 (NM_024817) variants (one frameshift, two nonsense, two missense variants, and one in-frame duplication) that have been reported in six probands are included in this curation (PMID 32855533, 41999216). One in-frame duplication, *THSD4*:c.137_145dup (p.Asp46_Gly48dup), one frameshift variant, *THSD4*:c.1402del (p.Ala468GlnfsX45), and one nonsense variant *THSD4*:c.740del (p.Leu247Ter), were shown to segregate with disease in families (PMIDs 32855533); however, there were insufficient number of segregations to qualify as scorable evidence as per the ClinGen Gene-Disease Validity Standard Operating Procedures (version 12). The evidentiary value of the variants, *THSD4*:c.2258G>A (p.Gly753Asp) and *THSD4*c.2341C>T (p.Arg781Trp) were reduced due to high minor allele frequency. Functional studies completed for the two PTC variants and the two missense variants demonstrated haploinsufficiency or impaired assembly (disorganization of the aortic media) of fibrillin-1 microfibrils (PMID 32855533). An additional nonsense variant, *THSD4*:c.1862G>A (p.Trp621Ter), has been reported in a 61 year old male with a history of annuloaortic ectasia and bicuspid aortic valve and is predicted to result in loss of function through premature termination, consistent with the *THSD4* haploinsufficiency mechanism which has been proposed for *THSD4* in heritable thoracic aortic disease (PMID 41999216). This gene-disease relationship is further supported by experimental data in the form of tissue expression, biochemical/functional assays, and mouse models. Bulk tissue gene expression data from the GTEx Portal indicates *THSD4* is expressed in arteries/aorta (PMID: 23715323). Protein interaction studies demonstrate ADAMTSL-6 is a novel microfibril-associated protein that binds directly to fibrillin-1 and promotes assembly of fibrillin-1 microfibrils (PMID 19940141). Thsd4+/− mouse models revealed typical medial degeneration and diffuse disruption of extracellular matrix in aortic samples (PMID 32855533). Although the total evidence score is 9.6 points, the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Gene Curation Expert Panel opted to downgrade the classification from Moderate to Limited on the basis of recent unpublished data showing multiple observations of nonpenetrance of an aortic disease phenotype among families with the TSHD4 variant and, even more importantly, non-segregation of the familial TSHD4 variant in family members with thoracic aortic aneurysm/dissection. These observations question the monogenic character of *THSD4* in relation to FTAAD (Mèlanie H.A.M. Perik, 2024, University of Antwerp, manuscript in preparation for publication and PhD thesis, https://hdl.handle.net/10067/2079210151162165141). In summary, there is limited evidence to support this gene-disease relationship. This classification was approved by the ClinGen Heritable Thoracic Aortic Aneurysm and Dissection subgroup of the Hereditary Cardiovascular Gene Curation Expert Panel on the meeting date September 4, 2026 (SOP Version 12).
Inheritance Pattern: AD
Disease ID:MONDO:0019625
Submitter: Ambry Genetics
Inheritance Pattern: AD
Disease ID:MONDO:0030731
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:0019625
Submitter: Franklin by Genoox
As part of Thoracic aortic aneurysm and dissection study conducted in France, two unrelated probands were found to carry THSD4 heterozygote mutation which were considered causative. https://doi.org/10.1038/s41436-020-00947-4
Clinical Genomic Database (CGD)
Manifestation: Cardiovascular; Craniofacial; Musculoskeletal; Pulmonary
Intervention: Cardiovascular
Rationale: The condition involves increased risk of aortic aneurysms, and awareness may allow early detection and management
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to THSD4 variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_024817.3. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 10 | 2 | 13 | ||
| missense | 1 | 185 | 20 | 5 | 211 | |
| nonsense | 2 | 2 | 4 | |||
| start loss | 0 | |||||
| frameshift | 3 | 1 | 4 | |||
| splice donor/acceptor (+/-2bp) | 1 | 5 | 6 | |||
| Total | 4 | 4 | 193 | 30 | 7 | 238 |
Highest pathogenic variant AF is 0.000006156448
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_079093.2 | 17 | MANE Select | |
| Ensembl | ENSP00000261862.8 | 17 | MANE Select | |
| RefSeq | NP_001273358.1 | 12 | Standard | |
| RefSeq | NP_001381461.1 | 17 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Post-translational protein modification
- Metabolism of proteins
- O-glycosylation of TSR domain-containing proteins
- O-linked glycosylation
Biological Process
- proteolysis
- elastic fiber assembly
Molecular Function
- extracellular matrix structural constituent
- peptidase activity
Cellular Component
- microfibril
- collagen-containing extracellular matrix
- extracellular exosome
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000355327
- Coding exons
- 17
- Length
- 686432
- Individuals with no LoFs
- 124793
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 62
- Defined
- 124855
- p
- 0.000248
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.399 | 571 | 598 | 0.954 | 0.0000381 | 6632 |
| Missense (PolyPhen) | 133 | 172.12 | 0.7727 | 1802 | ||
| Synonymous | 0.213 | 236 | 240 | 0.983 | 0.0000165 | 1979 |
| Loss of Function | 4.01 | 20 | 50.8 | 0.393 | 0.00000263 | 561 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0.00029 | 0.00029 | rare |
| Ashkenazi Jewish | 0.0020 | 0.0020 | notable |
| East Asian | 0.00045 | 0.00044 | rare |
| Finnish | 0 | 0.0 | absent |
| European (Non-Finnish) | 0.00011 | 0.00011 | rare |
| South Asian | 0.00026 | 0.00026 | rare |
| Other | 0.00066 | 0.00066 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Promotes FBN1 matrix assembly. Attenuates TGFB signaling, possibly by accelerating the sequestration of large latent complexes of TGFB or active TGFB by FBN1 microfibril assembly, thereby negatively regulating the expression of TGFB regulatory targets, such as POSTN (By similarity). {ECO:0000250}.;
Recessive Scores
- pRec
- 0.137
Intolerance Scores
- LoFtool
- 0.539
- RVIS EVS
- -0.94
- RVIS percentile EVS
- 9.41
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- N
- Indispensability score
- 0.192
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |