TICAM2-AS1

TICAM2 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 5:115602057-115623897

Links

ENSG00000249249 ∙ NCBI:101927100 ∙ ∙ HGNC:55575 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TICAM2-AS1 gene.

• not provided (42 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TICAM2-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			19	20	3	42
Total	0	0	19	20	3

Variants in TICAM2-AS1

This is a list of pathogenic ClinVar variants found in the TICAM2-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
5-115616212-T-A			Likely benign (Apr 10, 2022)
5-115616223-GA-AT			Uncertain significance (Sep 29, 2022)
5-115616228-G-C		not specified	Uncertain significance (Apr 23, 2024)
5-115616229-T-C			Uncertain significance (Mar 25, 2023)
5-115616262-A-G			Likely benign (Aug 07, 2023)
5-115616272-C-T			Likely benign (Apr 06, 2022)
5-115616281-G-A			Likely benign (Dec 26, 2022)
5-115616312-A-G			Uncertain significance (Sep 17, 2023)
5-115616314-T-A			Benign (Jan 31, 2024)
5-115616332-T-G			Likely benign (Feb 27, 2023)
5-115616342-T-A			Uncertain significance (Aug 10, 2022)
5-115616357-C-T			Uncertain significance (Jul 09, 2022)
5-115616387-G-T			Uncertain significance (Jun 29, 2022)
5-115616392-A-G			Likely benign (Apr 18, 2022)
5-115616436-C-G			Uncertain significance (Jan 12, 2024)
5-115616456-A-G			Likely benign (Feb 28, 2022)
5-115616459-T-C			Likely benign (Aug 27, 2022)
5-115616462-T-C			Likely benign (Feb 27, 2022)
5-115616465-G-A			Likely benign (Oct 10, 2021)
5-115620415-T-C			Likely benign (Nov 27, 2023)
5-115620417-G-A			Likely benign (Jul 09, 2022)
5-115620421-A-AT			Benign (Dec 08, 2021)
5-115620421-A-ATT			Benign (Jan 29, 2024)
5-115620428-T-A			Likely benign (Jul 14, 2022)
5-115620437-G-T			Uncertain significance (May 27, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP