TMEM101

transmembrane protein 101

Basic information

Region (hg38): 17:44011188-44023946

Links

ENSG00000091947 ∙ NCBI:84336 ∙ ∙ HGNC:28653 ∙ Uniprot:Q96IK0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TMEM101 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TMEM101 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			13			13
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	0	1

Variants in TMEM101

This is a list of pathogenic ClinVar variants found in the TMEM101 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-44011984-G-A		not specified	Uncertain significance (Feb 28, 2023)
17-44012065-G-C		not specified	Uncertain significance (Apr 09, 2024)
17-44012098-G-T		not specified	Uncertain significance (Mar 28, 2024)
17-44013061-C-T		not specified	Uncertain significance (May 14, 2024)
17-44013062-G-A		not specified	Uncertain significance (Dec 26, 2023)
17-44013142-G-A		not specified	Uncertain significance (Feb 16, 2023)
17-44014391-A-T		not specified	Uncertain significance (Jun 10, 2022)
17-44014401-C-T		not specified	Uncertain significance (Jul 09, 2021)
17-44014430-G-A		not specified	Uncertain significance (Feb 10, 2023)
17-44014865-C-A		not specified	Uncertain significance (Oct 06, 2021)
17-44014876-C-T		not specified	Uncertain significance (Jul 14, 2022)
17-44014888-A-G		not specified	Uncertain significance (May 17, 2023)
17-44014899-C-T			Benign (Jun 27, 2018)
17-44014910-T-A		not specified	Uncertain significance (Jan 03, 2024)
17-44014937-C-G		not specified	Uncertain significance (Nov 21, 2023)
17-44014937-C-T		not specified	Uncertain significance (Jan 10, 2023)
17-44014941-C-G		not specified	Uncertain significance (Nov 28, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TMEM101	protein_coding	protein_coding	ENST00000589334	4	12759

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00174	0.904	125721	0	24	125745	0.0000954

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.21	116	159	0.729	0.00000931	1629
Missense in Polyphen		35	58.266	0.60069		522
Synonymous	0.0255	69	69.3	0.996	0.00000394	552
Loss of Function	1.46	6	11.3	0.532	4.83e-7	123

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000615	0.0000615
Ashkenazi Jewish	0.0000992	0.0000992
East Asian	0.000165	0.000163
Finnish	0.00	0.00
European (Non-Finnish)	0.000133	0.000132
Middle Eastern	0.000165	0.000163
South Asian	0.000131	0.000131
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May activate NF-kappa-B signaling pathways. {ECO:0000269|PubMed:12761501}.

Intolerance Scores

• rvis_EVS: -0.41
• rvis_percentile_EVS: 26.23

Haploinsufficiency Scores

• pHI: 0.282
• hipred: Y
• hipred_score: 0.501
• ghis: 0.581

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.850

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tmem101

Gene ontology

• Biological process: positive regulation of I-kappaB kinase/NF-kappaB signaling
• Cellular component: cellular_component;integral component of membrane