TMEM11

transmembrane protein 11

Basic information

Region (hg38): 17:21197954-21214176

Previous symbols: [ "C17orf35" ]

Links

ENSG00000178307 ∙ NCBI:8834 ∙ OMIM:618817 ∙ HGNC:16823 ∙ Uniprot:P17152 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TMEM11 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TMEM11 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous					1	1
missense			11			11
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	11	0	1

Variants in TMEM11

This is a list of pathogenic ClinVar variants found in the TMEM11 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-21198329-C-T		not specified	Uncertain significance (May 10, 2022)
17-21198334-T-C		not specified	Uncertain significance (Sep 17, 2021)
17-21198467-G-A			Benign (Dec 31, 2019)
17-21198469-C-T		not specified	Uncertain significance (Jan 23, 2023)
17-21198572-C-T		not specified	Uncertain significance (Dec 04, 2023)
17-21198601-A-G		not specified	Uncertain significance (Jun 07, 2022)
17-21198616-G-A		not specified	Uncertain significance (Oct 25, 2023)
17-21198632-C-T		not specified	Uncertain significance (Mar 11, 2022)
17-21198674-C-T		not specified	Uncertain significance (Oct 02, 2023)
17-21198703-A-G		not specified	Uncertain significance (Dec 19, 2022)
17-21198829-G-A		not specified	Uncertain significance (Dec 08, 2023)
17-21198839-C-A		not specified	Uncertain significance (Aug 04, 2021)
17-21214107-C-G		not specified	Uncertain significance (Apr 09, 2024)
17-21214121-G-A		not specified	Uncertain significance (Jun 17, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TMEM11	protein_coding	protein_coding	ENST00000317635	2	17345

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.879	0.119	123685	0	1	123686	0.00000404

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.35	81	123	0.658	0.00000767	1220
Missense in Polyphen		13	39.168	0.3319		423
Synonymous	0.244	60	62.5	0.961	0.00000460	412
Loss of Function	2.43	0	6.89	0.00	2.95e-7	79

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000290	0.0000290
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Plays a role in mitochondrial morphogenesis. {ECO:0000269|PubMed:21274005}.

Recessive Scores

• pRec: 0.115

Intolerance Scores

• loftool: 0.0735
• rvis_EVS: -0.21
• rvis_percentile_EVS: 38.28

Haploinsufficiency Scores

• pHI: 0.269
• hipred: Y
• hipred_score: 0.528
• ghis: 0.599

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.651

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tmem11

Gene ontology

• Biological process: mitochondrion organization;inner mitochondrial membrane organization
• Cellular component: mitochondrion;integral component of plasma membrane;integral component of mitochondrial inner membrane
• Molecular function: molecular_function;protein binding