TMEM168

protein-coding

transmembrane protein 168

Gene summary

Enables sodium channel regulator activity. Predicted to act upstream of or within regulation of ubiquitin-dependent protein catabolic process and regulation of voltage-gated sodium channel activity. Located in nuclear membrane and transport vesicle. [provided by Alliance of Genome Resources, Apr 2025]

MANE transcript

NM_022484.6

Inheritance

AD

ClinVar variants

U:87B:2

Top phenotype

—

gnomAD constraint

pLI —, LoF o/e 0.36

Max pathogenic AF

—

Genomic locus

chr7:112,762,377-112,790,423

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~28.0 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

Brugada syndromeNO_KNOWN

Inheritance Pattern: AD

Disease ID:MONDO:0015263

Submitter: ClinGen

The relationship between TMEM168 and autosomal dominant Brugada syndrome was suggested by Shimizu et al. in 2020, following the identification of the TMEM168 c.1616G>A, p.Arg539Gln variant in a family with Brugada syndrome (PMID: 32175648). Functional evidence from mouse and cell models suggested a mechanism involving decreased cardiomyocyte cell surface Nav1.5 expression in cells with the p.Arg539Gln variant. In a follow-up publication, Nguyen et al. suggested that the TMEM168 p.Arg539Gln variant was involved in sequestering αB-crystallin, thereby promoting Nav1.5 degradation (PMID: 34086898). However, with an allele frequency of 9.88 x 10-5 in the South Asian population (and 1.24 x 10-5 overall in gnomAD v4.1) this variant is too common to be a monogenic driver of autosomal dominant Brugada syndrome. As of the date of this classification, there are no further reports of TMEM168 variants causing cardiac disease in the literature. This gene-disease relationship was evaluated on January 13, 2026, by the Hereditary Cardiovascular Disorders GCEP. Given the absence of compelling clinical genetic data, this gene-disease classification was disputed. This classification was approved by the ClinGen Hereditary Cardiovascular Disorders GCEP on January 13, 2026 (in accordance with SOP Version 11).

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to TMEM168 variants in ClinVar

2 Conditions Cataloged
not specifiedTotal: 84
not providedTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_022484.6. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
1
missense
86
clinvar
1
clinvar
1
clinvar
88
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
0
Total00871189
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 47 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_022484.6RefSeqNP_071929.34MANE Select
ENST00000312814.11EnsemblENSP00000323068.44MANE Select
NM_001287497.2RefSeqNP_001274426.14Standard
ENST00000418785.5EnsemblENSP00000404253.14Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Cellular Component

  • integral component of membrane
  • transport vesicle

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000312814
Coding exons
4
Length
28211
Individuals with no LoFs
125677
Homozygous LoFs
0
Heterozygous LoFs
70
Defined
125747
p
0.000278
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.8903253730.8700.00001934552
Missense (PolyPhen)92113.290.812091358
Synonymous-0.8131471351.090.000007021375
Loss of Function2.80822.20.3609.30e-7334

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American0.000380.00038rare
Ashkenazi Jewish00.0absent
East Asian0.000270.00027rare
Finnish00.0absent
European (Non-Finnish)0.000320.00032rare
South Asian0.000460.00046rare
Other0.000210.00016rare

dbNSFP Gene Annotations

Source: dbNSFP

Intolerance Scores

LoFtool
0.234
RVIS EVS
-0.62
RVIS percentile EVS
17.31

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.584

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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