TMEM184B

transmembrane protein 184B

Basic information

Region (hg38): 22:38219291-38273010

Previous symbols: [ "C22orf5" ]

Links

ENSG00000198792 ∙ NCBI:25829 ∙ ∙ HGNC:1310 ∙ Uniprot:Q9Y519 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TMEM184B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TMEM184B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13	2		15
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	2	0

Variants in TMEM184B

This is a list of pathogenic ClinVar variants found in the TMEM184B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
22-38221519-C-T		not specified	Uncertain significance (May 08, 2023)
22-38221549-C-T		not specified	Likely benign (May 04, 2022)
22-38221563-C-T		not specified	Uncertain significance (Sep 01, 2021)
22-38221587-G-T		not specified	Uncertain significance (Aug 10, 2023)
22-38221654-G-A		not specified	Uncertain significance (Aug 02, 2021)
22-38221656-G-A		not specified	Uncertain significance (Dec 08, 2023)
22-38221695-A-G		not specified	Uncertain significance (Dec 02, 2022)
22-38221702-C-A		not specified	Uncertain significance (Jun 05, 2023)
22-38225480-C-A		not specified	Uncertain significance (Jun 17, 2024)
22-38225592-C-T		not specified	Uncertain significance (Jan 24, 2023)
22-38226794-C-T		not specified	Uncertain significance (Dec 03, 2021)
22-38246019-C-T		not specified	Uncertain significance (Jun 01, 2023)
22-38247829-C-A		not specified	Uncertain significance (Jan 07, 2022)
22-38247892-C-T		not specified	Uncertain significance (Mar 14, 2023)
22-38247924-G-A		not specified	Likely benign (Mar 05, 2024)
22-38247946-C-T		not specified	Uncertain significance (Apr 20, 2024)
22-38247951-C-T		not specified	Uncertain significance (Jun 06, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TMEM184B	protein_coding	protein_coding	ENST00000361906	8	53743

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.373	0.627	125735	0	11	125746	0.0000437

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.06	165	258	0.639	0.0000163	2640
Missense in Polyphen		23	66.401	0.34638		753
Synonymous	0.160	113	115	0.981	0.00000865	790
Loss of Function	3.03	4	17.8	0.225	7.57e-7	208

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000628	0.0000628
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000638	0.0000615
Middle Eastern	0.00	0.00
South Asian	0.0000653	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May activate the MAP kinase signaling pathway. {ECO:0000269|PubMed:12761501}.

Intolerance Scores

• loftool: 0.177
• rvis_EVS: -0.54
• rvis_percentile_EVS: 20.54

Haploinsufficiency Scores

• pHI: 0.337
• hipred: Y
• hipred_score: 0.728
• ghis: 0.566

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.356

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tmem184b
• Phenotype: nervous system phenotype (the observable morphological and physiological characteristics of the extensive, intricate network of electochemical structures in the body that is comprised of the brain, spinal cord, nerves, ganglia and parts of the receptor organs that are manifested through development and lifespan); behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); muscle phenotype; cellular phenotype

Gene ontology

• Cellular component: integral component of membrane