TMEM241

transmembrane protein 241, the group of Solute carrier family 35

Basic information

Region (hg38): 18:23197144-23437961

Previous symbols: [ "C18orf45" ]

Links

ENSG00000134490 ∙ NCBI:85019 ∙ OMIM:615430 ∙ HGNC:31723 ∙ Uniprot:Q24JQ0 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TMEM241 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TMEM241 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			12			12
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	12	0	0

Variants in TMEM241

This is a list of pathogenic ClinVar variants found in the TMEM241 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
18-23213989-C-G		not specified	Uncertain significance (Aug 12, 2022)
18-23214035-C-T		not specified	Uncertain significance (Jun 04, 2024)
18-23214050-G-A		not specified	Uncertain significance (Apr 07, 2023)
18-23234621-G-A		not specified	Uncertain significance (Apr 23, 2024)
18-23234679-G-A		not specified	Uncertain significance (Dec 15, 2023)
18-23235944-G-A		not specified	Uncertain significance (Nov 08, 2021)
18-23235975-C-A		not specified	Uncertain significance (Nov 08, 2022)
18-23236001-G-A		not specified	Uncertain significance (Apr 09, 2024)
18-23236019-G-A		not specified	Uncertain significance (Apr 20, 2024)
18-23237163-T-C		not specified	Uncertain significance (Oct 12, 2021)
18-23237222-G-A		not specified	Uncertain significance (Feb 27, 2023)
18-23237228-A-G		not specified	Uncertain significance (Apr 24, 2023)
18-23252978-G-C		not specified	Uncertain significance (Feb 06, 2023)
18-23252988-C-T		not specified	Uncertain significance (Dec 13, 2022)
18-23253015-C-A		not specified	Uncertain significance (Jan 12, 2024)
18-23253033-C-T		not specified	Uncertain significance (Jul 11, 2022)
18-23253746-G-A		not specified	Uncertain significance (May 23, 2023)
18-23253802-G-A		not specified	Uncertain significance (Feb 16, 2023)
18-23253820-G-A		not specified	Uncertain significance (Dec 06, 2022)
18-23257320-G-A		not specified	Uncertain significance (Nov 17, 2022)
18-23257342-A-G		not specified	Uncertain significance (Jul 12, 2022)
18-23257347-C-T		not specified	Uncertain significance (Jun 10, 2024)
18-23257357-A-T		not specified	Uncertain significance (Dec 14, 2023)
18-23309687-T-C		not specified	Uncertain significance (Apr 09, 2024)
18-23352259-A-T		not specified	Uncertain significance (Oct 26, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TMEM241	protein_coding	protein_coding	ENST00000383233	15	240818

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
8.47e-7	0.922	125722	0	25	125747	0.0000994

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.242	139	147	0.944	0.00000689	1899
Missense in Polyphen		34	35.497	0.95784		506
Synonymous	1.56	45	60.5	0.744	0.00000317	571
Loss of Function	1.73	13	21.7	0.599	9.23e-7	269

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000117	0.000117
Ashkenazi Jewish	0.00	0.00
East Asian	0.000292	0.000272
Finnish	0.0000932	0.0000924
European (Non-Finnish)	0.0000802	0.0000791
Middle Eastern	0.000292	0.000272
South Asian	0.000134	0.000131
Other	0.000164	0.000163

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0577

Intolerance Scores

• rvis_EVS: 0.75
• rvis_percentile_EVS: 86.57

Haploinsufficiency Scores

• pHI: 0.0440
• hipred: N
• hipred_score: 0.254
• ghis: 0.394

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Tmem241
• Phenotype: skeleton phenotype

Gene ontology

• Cellular component: integral component of membrane