TMEM255B
protein-codingtransmembrane protein 255B
Gene summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Jul 2025]
- FAM70B
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~57.8 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
No GenCC data available for this gene.
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to TMEM255B variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_182614.4. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 2 | 3 | |||
| missense | 59 | 7 | 66 | |||
| nonsense | 0 | |||||
| start loss | 0 | |||||
| frameshift | 0 | |||||
| splice donor/acceptor (+/-2bp) | 2 | 2 | ||||
| Total | 0 | 0 | 62 | 9 | 0 | 71 |
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_872420.1 | 9 | MANE Select | |
| Ensembl | ENSP00000364502.3 | 9 | MANE Select | |
| RefSeq | NP_001335592.1 | 8 | Standard | |
| Ensembl | ENSP00000479391.1 | 5 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Cellular Component
- integral component of membrane
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000375353
- Coding exons
- 9
- Length
- 52711
- Individuals with no LoFs
- 103325
- Homozygous LoFs
- 1765
- Heterozygous LoFs
- 20657
- Defined
- 125747
- p
- 0.0935
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | -0.179 | 206 | 199 | 1.04 | 0.0000126 | 2037 |
| Missense (PolyPhen) | 77 | 73.979 | 1.0408 | 803 | ||
| Synonymous | -0.401 | 106 | 101 | 1.05 | 0.00000791 | 718 |
| Loss of Function | -0.454 | 16 | 14.2 | 1.13 | 6.00e-7 | 173 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.22 | 0.17 | notable |
| Latino/Admixed American | 0.075 | 0.072 | notable |
| Ashkenazi Jewish | 0.22 | 0.20 | notable |
| East Asian | 0.00093 | 0.00092 | rare |
| Finnish | 0.098 | 0.092 | notable |
| European (Non-Finnish) | 0.12 | 0.11 | notable |
| South Asian | 0.041 | 0.036 | notable |
| Other | 0.13 | 0.12 | notable |
dbNSFP Gene Annotations
Source:
Intolerance Scores
- RVIS EVS
- 0.65
- RVIS percentile EVS
- 84.12
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |