TRABD

TraB domain containing

Basic information

Region (hg38): 22:50185913-50199598

Links

ENSG00000170638 ∙ NCBI:80305 ∙ ∙ HGNC:28805 ∙ Uniprot:Q9H4I3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TRABD gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TRABD gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			25	4		29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region				1		1
non coding						0
Total	0	0	25	5	0

Variants in TRABD

This is a list of pathogenic ClinVar variants found in the TRABD region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
22-50193067-G-A		not specified	Uncertain significance (Feb 28, 2023)
22-50193067-G-T		not specified	Uncertain significance (Feb 22, 2023)
22-50193091-G-A		not specified	Uncertain significance (Aug 11, 2022)
22-50193626-G-C		not specified	Uncertain significance (Dec 14, 2021)
22-50193641-C-A		not specified	Likely benign (Feb 06, 2023)
22-50194351-G-A		not specified	Uncertain significance (Jan 25, 2023)
22-50194394-A-G		not specified	Uncertain significance (Feb 28, 2024)
22-50194396-C-T		not specified	Uncertain significance (Mar 02, 2023)
22-50194409-C-T		not specified	Uncertain significance (Oct 10, 2023)
22-50194412-G-A		not specified	Uncertain significance (Sep 26, 2022)
22-50194907-G-A		not specified	Uncertain significance (Dec 15, 2023)
22-50194933-G-A		not specified	Uncertain significance (Mar 01, 2024)
22-50195020-C-G		not specified	Uncertain significance (Oct 26, 2021)
22-50197250-A-G		not specified	Uncertain significance (Aug 21, 2023)
22-50197489-G-A		not specified	Uncertain significance (Dec 28, 2022)
22-50197875-G-A		not specified	Uncertain significance (Nov 14, 2023)
22-50197890-G-A		not specified	Uncertain significance (Feb 01, 2023)
22-50197932-G-A		not specified	Likely benign (Jan 26, 2023)
22-50197947-A-G		not specified	Uncertain significance (Jan 26, 2022)
22-50197966-G-A		not specified	Uncertain significance (Jun 07, 2023)
22-50198092-G-A		not specified	Uncertain significance (Oct 29, 2021)
22-50198345-C-T		not specified	Likely benign (Jan 03, 2024)
22-50198353-C-T		not specified	Uncertain significance (Dec 22, 2023)
22-50198356-C-T		not specified	Uncertain significance (Feb 28, 2024)
22-50198361-G-A		not specified	Likely benign (Oct 03, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TRABD	protein_coding	protein_coding	ENST00000303434	9	13684

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0229	0.974	125646	0	14	125660	0.0000557

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.931	224	267	0.840	0.0000196	2418
Missense in Polyphen		49	84.215	0.58184		763
Synonymous	-0.665	127	118	1.08	0.00000937	771
Loss of Function	2.62	6	18.0	0.334	9.47e-7	187

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000290	0.0000290
Ashkenazi Jewish	0.000603	0.000596
East Asian	0.000109	0.000109
Finnish	0.0000481	0.0000462
European (Non-Finnish)	0.0000356	0.0000352
Middle Eastern	0.000109	0.000109
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.105

Intolerance Scores

• loftool: 0.0721
• rvis_EVS: -1.18
• rvis_percentile_EVS: 5.94

Haploinsufficiency Scores

• pHI: 0.0924
• hipred: Y
• hipred_score: 0.580
• ghis: 0.665

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.885

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Trabd