TRIM37

protein-coding

tripartite motif containing 37, the group of Tripartite motif family|Ring finger proteins

Gene summary

This gene encodes a member of the tripartite motif (TRIM) family, whose members are involved in diverse cellular functions such as developmental patterning and oncogenesis. The TRIM motif includes zinc-binding domains, a RING finger region, a B-box motif and a coiled-coil domain. The RING finger and B-box domains chelate zinc and might be involved in protein-protein and/or protein-nucleic acid interactions. Mutations in this gene are associated with mulibrey (muscle-liver-brain-eye) nanism, an autosomal recessive disorder that involves several tissues of mesodermal origin. TRIM37 localizes in peroxisomal membranes, and has been implicated in human peroxisomal biogenesis disorders. [provided by RefSeq, Jul 2020]

Previous symbols:
  • MUL

MANE transcript

NM_015294.6

Inheritance

AR

ClinVar variants

P:121U:192B:223

Top phenotype

Mulibrey nanism

gnomAD constraint

pLI —, LoF o/e 0.47

Max pathogenic AF

—

Genomic locus

chr17:58,982,638-59,106,921

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~124.3 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

mulibrey nanismSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0009664

Submitter: Labcorp Genetics (formerly Invitae)

mulibrey nanismSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009664

Submitter: Orphanet

mulibrey nanismSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0009664

Submitter: Ambry Genetics

mulibrey nanismSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0009664

Submitter: PanelApp Australia

mulibrey nanismDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009664

Submitter: G2P

mulibrey nanismDEFINITIVE

Inheritance Pattern: AR

Disease ID:MONDO:0009664

Submitter: ClinGen

The relationship between TRIM37 and Mulibrey Nanism, an autosomal recessive disorder, was evaluated using the ClinGen Clinical Validity Framework as of February, 2020. TRIM37 encodes a member of the tripartite motif family. Mulibrey nanism is a multi-organ defect affecting the muscles, liver, brain, eye (Braverman et al, 2012, Gene Reviews) and characterized by severe growth failure of prenatal onset, characteristic dysmorphic features, perimyocardial heart disease, metabolic syndrome and hepatomegaly (Kallijarvi et al, 2006; PMID: 16514549). TRIM37 was first reported in relation to autosomal recessive mulibrey nanism in 2000. (Avela et al, PMID: 10888877). At least 20 nonsense, splice site, frameshift, deletion/duplication and missense variants have been reported in humans in the ClinVar database. Evidence supporting this gene-disease relationship includes case-level data and experimental data. Summary of Case Level Data (12 points): Variants in this gene have been reported in at least 8 probands in 4 publications (PMID: 27256967, 17100991, 15108285, 10888877). More evidence is available in the literature, but the maximum score (12 points) for genetic evidence is reached. Two founder mutations in the Finnish population have been described: c.493-2A>G, referred to as the Finnish major mutation is most frequently seen, and Glu738fs, referred to as the Finnish minor mutation. The mechanism for disease is expected to be biallelic loss of function. Summary of experimental data (2 points): This gene-disease association is supported by in vitro functional assays and animal models. TRIM37 is shown to partially localize with the proxisome and interact with PEX5 to ubiquitylate it. Depletion of TRIM37 is shown to result in peroxisomal matrix protein import defect (PMID: 28724525). Mouse models of TRIM37 recapitulate the human disease; however no overt peroxisome pathology is noted (PMID: 27044324). In summary, TRIM37 is definitively associated with autosomal recessive mulibrey nanism. This has been repeatedly demonstrated in both the research and clinical diagnostic settings, and has been upheld over time. This classification was approved by the ClinGen Peroxisomal Disorders GCEP on May 1, 2020 (SOP Version 7).

Clinical Genomic Database (CGD)

Mulibrey nanismAR

Manifestation: Cardiovascular; Craniofacial; Dermatologic; Endocrine; Gastrointestinal; Musculoskeletal; Neurologic; Oncologic; Ophthalmologic

Intervention: Cardiovascular; Oncologic

Rationale: Surveillance and early detection of and treatment for malignancy (Wilms tumors, as well a number of other cancer types have been reported) may decrease morbidity and mortality; Awareness of cardiovascular anomalies (including structural anomalies, as well as pericardial constriction and congestive heart failure) may be beneficial in order to allow early diagnosis and treatment

Comments: The condition may involve multiple malformations

Refs: 4124529; 135512; 8335020; 10888877; 12754710; 14757854; 15108285; 15590968; 16306379; 17100991; 16310976; 17551331; 19329943; 19334051; 21865362; 23385855Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to TRIM37 variants in ClinVar

7 Conditions Cataloged
not providedTotal: 627
Mulibrey nanism syndromeTotal: 138
Inborn genetic diseasesTotal: 112
TRIM37-related disorderTotal: 42
not specifiedTotal: 36
Multiple congenital anomalies/dysmorphic syndrome-intellectual disabilityTotal: 1
See casesTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_015294.6. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
3
clinvar
217
clinvar
1
clinvar
221
missense
4
clinvar
187
clinvar
4
clinvar
1
clinvar
196
nonsense
16
clinvar
24
clinvar
40
start loss
0
frameshift
25
clinvar
27
clinvar
52
splice donor/acceptor (+/-2bp)
1
clinvar
24
clinvar
2
clinvar
27
Total42791922212536

Highest pathogenic variant AF is 0.0003123168

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 159 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_015294.6RefSeqNP_056109.124MANE Select
ENST00000262294.12EnsemblENSP00000262294.724MANE Select
NM_001005207.5RefSeqNP_001005207.125Standard
NM_001320987.3RefSeqNP_001307916.123Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Ubiquitin mediated proteolysis - Homo sapiens (human)
  • Immune System
  • Adaptive Immune System
  • Antigen processing: Ubiquitination & Proteasome degradation
  • Class I MHC mediated antigen processing & presentation

Biological Process

  • negative regulation of transcription by RNA polymerase II
  • negative regulation of NF-kappaB transcription factor activity
  • histone H2A monoubiquitination
  • histone H2A-K119 monoubiquitination
  • negative regulation of centriole replication

Molecular Function

  • chromatin binding
  • ubiquitin-protein transferase activity
  • tumor necrosis factor receptor binding
  • protein binding
  • zinc ion binding

Cellular Component

  • cytoplasm
  • peroxisome
  • cytosol
  • aggresome
  • ESC/E(Z) complex

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000262294
Coding exons
24
Length
124284
Individuals with no LoFs
125461
Homozygous LoFs
0
Heterozygous LoFs
287
Defined
125748
p
0.00114
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.8204765290.9000.00002866356
Missense (PolyPhen)97151.530.640161798
Synonymous-0.06391771761.010.000008991791
Loss of Function3.852961.60.4710.00000367685

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000620.000062rare
Latino/Admixed American0.000410.00040rare
Ashkenazi Jewish0.000300.00030rare
East Asian0.000650.00065rare
Finnish0.00910.0091notable
European (Non-Finnish)0.000460.00045rare
South Asian0.000130.00013rare
Other0.000820.00081rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: E3 ubiquitin-protein ligase required to prevent centriole reduplication (PubMed:15885686, PubMed:23769972). Probably acts by ubiquitinating positive regulators of centriole reduplication (PubMed:23769972). Mediates monoubiquitination of 'Lys-119' of histone H2A (H2AK119Ub), a specific tag for epigenetic transcriptional repression: associates with some Polycomb group (PcG) multiprotein PRC2-like complex and mediates repression of target genes (PubMed:25470042). Has anti-HIV activity (PubMed:24317724). {ECO:0000269|PubMed:15885686, ECO:0000269|PubMed:23769972, ECO:0000269|PubMed:24317724, ECO:0000269|PubMed:25470042}.;
Disease
DISEASE: Mulibrey nanism (MUL) [MIM:253250]: An autosomal recessive growth disorder characterized by severe growth failure of prenatal onset, constrictive pericardium and progressive cardiomyopathy, facial dysmorphism, and failure of sexual maturation. Additional clinical features include hepatomegaly, muscle hypotonia, J-shaped sella turcica, yellowish dots in the ocular fundi, hypoplasia of various endocrine glands, insulin resistance with type 2 diabetes, and an increased risk for Wilms' tumor. {ECO:0000269|PubMed:10888877, ECO:0000269|PubMed:12754710, ECO:0000269|PubMed:15108285, ECO:0000269|PubMed:15885686, ECO:0000269|PubMed:17100991, ECO:0000269|PubMed:17551331, ECO:0000269|PubMed:21865362, ECO:0000269|PubMed:23385855}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.289

Intolerance Scores

LoFtool
0.884
RVIS EVS
-0.22
RVIS percentile EVS
37.54

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
S
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.928

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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