TRIM66

tripartite motif containing 66, the group of Tripartite motif family|Bromodomain containing|PHD finger proteins

Basic information

Region (hg38): 11:8612037-8682694

Previous symbols: [ "C11orf29" ]

Links

ENSG00000166436 ∙ NCBI:9866 ∙ OMIM:612000 ∙ HGNC:29005 ∙ Uniprot:O15016 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the TRIM66 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the TRIM66 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1	1	2
missense			72	5	2	79
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region					1	1
non coding						0
Total	0	0	72	6	3

Variants in TRIM66

This is a list of pathogenic ClinVar variants found in the TRIM66 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-8618805-G-A		not specified	Uncertain significance (Mar 01, 2024)
11-8618820-G-A		not specified	Uncertain significance (Jun 22, 2023)
11-8618877-T-C		not specified	Uncertain significance (Dec 17, 2023)
11-8618887-G-A		not specified	Uncertain significance (Mar 30, 2024)
11-8618895-G-A		not specified	Uncertain significance (Apr 12, 2024)
11-8618940-C-A		not specified	Uncertain significance (Apr 22, 2024)
11-8618963-G-C		not specified	Uncertain significance (Aug 02, 2021)
11-8619454-G-A		not specified	Uncertain significance (Jan 03, 2024)
11-8619510-T-C		not specified	Uncertain significance (Dec 27, 2023)
11-8619532-G-A		not specified	Uncertain significance (Nov 08, 2022)
11-8620055-G-A		not specified	Uncertain significance (Dec 12, 2022)
11-8620063-G-A		not specified	Uncertain significance (Jan 17, 2023)
11-8620090-T-C		not specified	Uncertain significance (Dec 07, 2023)
11-8620456-T-C			Likely benign (Apr 25, 2018)
11-8620481-G-A			Likely benign (Sep 01, 2022)
11-8620568-C-G		not specified	Uncertain significance (Jan 31, 2023)
11-8621089-C-T		not specified	Likely benign (Jun 21, 2022)
11-8621116-T-C		not specified	Uncertain significance (Oct 25, 2023)
11-8621162-G-C		not specified	Uncertain significance (Feb 17, 2024)
11-8621185-C-T		not specified	Uncertain significance (Apr 11, 2023)
11-8621192-T-C		not specified	Uncertain significance (Jun 03, 2022)
11-8621264-C-A		not specified	Uncertain significance (May 20, 2024)
11-8621284-G-A		not specified	Uncertain significance (Jun 04, 2024)
11-8621654-C-G		not specified	Uncertain significance (Apr 22, 2024)
11-8621707-G-C		not specified	Uncertain significance (Jan 26, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
TRIM66	protein_coding	protein_coding	ENST00000402157	19	59830

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
6.94e-12	1.00	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.29	546	638	0.856	0.0000317	8130
Missense in Polyphen		160	228.94	0.69886		2999
Synonymous	2.08	206	248	0.832	0.0000123	2446
Loss of Function	3.50	28	56.3	0.497	0.00000296	638

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May function as transcription repressor; The repressive effects are mediated, at least in part, by recruitment of deacetylase activity. May play a role as negative regulator of postmeiotic genes acting through CBX3 complex formation and centromere association (By similarity). {ECO:0000250}.

Recessive Scores

• pRec: 0.0846

Haploinsufficiency Scores

• pHI: 0.280

Essentials

• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0273

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	High	Medium	High
Primary Immunodeficiency	High	High	High
Cancer	High	High	High

Mouse Genome Informatics

• Gene name: Trim66
• Phenotype: growth/size/body region phenotype; adipose tissue phenotype (the observable morphological and physiological characteristics of mammalian fat tissue that are manifested through development and lifespan); behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); hematopoietic system phenotype

Gene ontology

• Biological process: negative regulation of transcription, DNA-templated
• Cellular component: nucleus;nucleoplasm;aggresome
• Molecular function: chromatin binding;zinc ion binding