TUBB4B
protein-codingtubulin beta 4B class IVb, the group of Tubulins
Gene summary
Enables double-stranded RNA binding activity. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in axonemal microtubule. Implicated in Leber congenital amaurosis with early-onset deafness. [provided by Alliance of Genome Resources, Jun 2026]
- TUBB2C
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~2.4 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AD
Disease ID:MONDO:1060115
Submitter: ClinGen
*TUBB4B* was first described in relation to Leber congenital amaurosis with early-onset deafness in 2019 (Mechaussier et al., PMID: 31884617). Some of the most common phenotypes among patients with this diagnosis include early onset loss of visual acuity, extinguished or severely reduced rod and cone electroretinogram responses, peripheral retinal atrophy, photophobia, nyctalopia, and high hypermetropia. Affected individuals also exhibited congenital or childhood onset sensorineural hearing impairment. *TUBB4B* variants were subsequently described in relation to primary ciliary dyskinesia in 2024 (PMID: 38662826). Patient phenotypes included recurrent infections, neonatal respiratory distress, bronchiectasis, decreased nasal nitric oxide, chronic productive cough, sensorineural or conductive hearing impairment, hydrocephalus, abnormal ciliary motility, recurrent ear infections, short stature, and loss of visual acuity. Per criteria outlined by the ClinGen Lumping & Splitting Working Group, the mode of inheritance (autosomal dominant) and molecular mechanism (frequently caused by *de novo* missense variants) were found to be consistent between the cases diagnosed with Leber congenital amaurosis with early-onset deafness and those diagnosed with primary ciliary dyskinesia. In addition, the shared feature of hearing loss among both groups of patients was consistent with a single spectrum of disease. Therefore, cases caused by inherited *TUBB4B* variants have been lumped for the purposes of gene curation into a single disease entity referred to as "TUBB4B-related ciliopathy" This curation includes 11 variants that have been reported in 21 probands in 6 publications (PMIDs: 38662826, 37448631, 35240325, 38719929, 39876836, 29198720). Most of the probands carried *de novo* variants, while some had affected family members carrying the same variant. Some degree of genotype-phenotype correlation was observed in which the missense variants at amino acid 390 or 391 were present in cases diagnosed as Leber congenital amaurosis, while missense variants located at amino acid 259 were associated with diagnosis of primary ciliary dyskinesia. Overall, the mechanism of pathogenicity among all cases appears to be dominant negative. This gene-disease relationship was also supported by the finding that *TUBB4B* is primarily expressed in testis, fallopian tubes, lung, and other respiratory tissues known to harbor multiciliated cells (PMID: 23715323). *TUBB4B* encodes β4B-tubulin, which localizes within the cilium (PMID: 38031972). A knockout mouse model recapitulated the hydrocephalus seen in the human probands and showed microtubule defects in motile cilia, absence of the central pair apparatus, male infertility, and spermatogenesis defects. A second knockout model recapitulated the hearing loss, ear infections, hydrocephalus, and motile ciliary defects in epithelial cells (PMID: 39277687). Cultured cells expressing mutant *TUBB4B* were able to fold, form αβ-heterodimers, and co-assemble them into the endogenous microtubule lattice, however, the growth dynamics of the microtubules were consistently altered (PMID: 29198720). In conclusion, *TUBB4B* has a Definitive association with TUBB4B-related ciliopathy. This classification has been repeatedly demonstrated in both research and diagnostic settings, and has been upheld over time without the emergence of contradictory evidence. This classification was approved by the Motile Ciliopathy GCEP on April 10th, 2025 in collaboration with the Hearing Loss GCEP (SOP Version 11).
Inheritance Pattern: AD
Disease ID:MONDO:0060650
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AD
Disease ID:MONDO:1060115
Submitter: PanelApp Australia
Clinical Genomic Database (CGD)
Manifestation: Audiologic/Otolaryngologic; Ophthalmologic
Intervention: Audiologic/Otolaryngologic
Rationale: Early recognition and treatment of hearing impairment may improve outcomes, including speech and language development
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to TUBB4B variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_006088.6. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 1 | 137 | 3 | 141 | ||
| missense | 2 | 8 | 33 | 43 | ||
| nonsense | 1 | 1 | ||||
| start loss | 0 | |||||
| frameshift | 2 | 2 | ||||
| splice donor/acceptor (+/-2bp) | 0 | |||||
| Total | 2 | 8 | 37 | 137 | 3 | 187 |
Highest pathogenic variant AF is 0.000001368738
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_006079.1 | 4 | MANE Select | |
| Ensembl | ENSP00000341289.4 | 4 | MANE Select | |
| Ensembl | ENSP00000608272.1 | 4 | Standard | |
| Ensembl | ENSP00000608272.1 | 4 | Standard |
Model Organisms & Knockout Phenotypes
Observed phenotypic effects in mouse and zebrafish models
| Gene / Model | Organism | Observed Phenotype |
|---|---|---|
| tubb4b | Danio rerio | Structure: otolith Quality: malformed abnormal |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Phagosome - Homo sapiens (human)
- Gap junction - Homo sapiens (human)
- Pathogenic Escherichia coli infection - Homo sapiens (human)
- Pathogenic Escherichia coli infection
- Parkin-Ubiquitin Proteasomal System pathway
Biological Process
- G2/M transition of mitotic cell cycle
- microtubule cytoskeleton organization
- mitotic cell cycle
- microtubule-based process
- regulation of G2/M transition of mitotic cell cycle
Molecular Function
- double-stranded RNA binding
- GTPase activity
- structural constituent of cytoskeleton
- GTP binding
- MHC class I protein binding
Cellular Component
- extracellular region
- nucleus
- cytoplasm
- cytosol
- cytoskeleton
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000340384
- Coding exons
- 4
- Length
- 2495
- Individuals with no LoFs
- 125444
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 3
- Defined
- 125447
- p
- 0.0000120
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 4.50 | 66 | 276 | 0.239 | 0.0000174 | 2955 |
| Missense (PolyPhen) | 15 | 121.34 | 0.12362 | 1379 | ||
| Synonymous | -9.11 | 245 | 119 | 2.06 | 0.00000851 | 872 |
| Loss of Function | 3.00 | 2 | 14.2 | 0.141 | 6.19e-7 | 158 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0 | 0.0 | absent |
| Latino/Admixed American | 0.000029 | 0.000029 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0 | 0.0 | absent |
| Finnish | 0.000046 | 0.000046 | rare |
| European (Non-Finnish) | 0.0000089 | 0.0000088 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0 | 0.0 | absent |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.;
- Disease
- DISEASE: Leber congenital amaurosis with early-onset deafness (LCAEOD) [MIM:617879]: An autosomal dominant disease characterized by severe retinal degeneration and sensorineural hearing loss. Symptoms occur within the first decade of life. Onset at birth is observed in some patients. {ECO:0000269|PubMed:29198720}. Note=The disease is caused by mutations affecting the gene represented in this entry.;
Recessive Scores
- pRec
- 0.388
Intolerance Scores
- RVIS EVS
- -1
- RVIS percentile EVS
- 8.32
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- N
- Indispensability score
- 0.114
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Low | Low | Low |
| Primary Immunodeficiency | Medium | Low | Medium |
| Cancer | Low | Low | Low |