TUBB4B

protein-coding

tubulin beta 4B class IVb, the group of Tubulins

Gene summary

Enables double-stranded RNA binding activity. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Located in axonemal microtubule. Implicated in Leber congenital amaurosis with early-onset deafness. [provided by Alliance of Genome Resources, Jun 2026]

Previous symbols:
  • TUBB2C

MANE transcript

NM_006088.6

Inheritance

AD

ClinVar variants

P:10U:37B:140

Top phenotype

Leber congenital amaurosis with early-onset deafness

gnomAD constraint

pLI —, LoF o/e 0.14

Max pathogenic AF

—

Genomic locus

chr9:137,241,287-137,243,707

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~2.4 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

TUBB4B-related ciliopathyDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:1060115

Submitter: ClinGen

*TUBB4B* was first described in relation to Leber congenital amaurosis with early-onset deafness in 2019 (Mechaussier et al., PMID: 31884617). Some of the most common phenotypes among patients with this diagnosis include early onset loss of visual acuity, extinguished or severely reduced rod and cone electroretinogram responses, peripheral retinal atrophy, photophobia, nyctalopia, and high hypermetropia. Affected individuals also exhibited congenital or childhood onset sensorineural hearing impairment. *TUBB4B* variants were subsequently described in relation to primary ciliary dyskinesia in 2024 (PMID: 38662826). Patient phenotypes included recurrent infections, neonatal respiratory distress, bronchiectasis, decreased nasal nitric oxide, chronic productive cough, sensorineural or conductive hearing impairment, hydrocephalus, abnormal ciliary motility, recurrent ear infections, short stature, and loss of visual acuity. Per criteria outlined by the ClinGen Lumping & Splitting Working Group, the mode of inheritance (autosomal dominant) and molecular mechanism (frequently caused by *de novo* missense variants) were found to be consistent between the cases diagnosed with Leber congenital amaurosis with early-onset deafness and those diagnosed with primary ciliary dyskinesia. In addition, the shared feature of hearing loss among both groups of patients was consistent with a single spectrum of disease. Therefore, cases caused by inherited *TUBB4B* variants have been lumped for the purposes of gene curation into a single disease entity referred to as "TUBB4B-related ciliopathy" This curation includes 11 variants that have been reported in 21 probands in 6 publications (PMIDs: 38662826, 37448631, 35240325, 38719929, 39876836, 29198720). Most of the probands carried *de novo* variants, while some had affected family members carrying the same variant. Some degree of genotype-phenotype correlation was observed in which the missense variants at amino acid 390 or 391 were present in cases diagnosed as Leber congenital amaurosis, while missense variants located at amino acid 259 were associated with diagnosis of primary ciliary dyskinesia. Overall, the mechanism of pathogenicity among all cases appears to be dominant negative. This gene-disease relationship was also supported by the finding that *TUBB4B* is primarily expressed in testis, fallopian tubes, lung, and other respiratory tissues known to harbor multiciliated cells (PMID: 23715323). *TUBB4B* encodes β4B-tubulin, which localizes within the cilium (PMID: 38031972). A knockout mouse model recapitulated the hydrocephalus seen in the human probands and showed microtubule defects in motile cilia, absence of the central pair apparatus, male infertility, and spermatogenesis defects. A second knockout model recapitulated the hearing loss, ear infections, hydrocephalus, and motile ciliary defects in epithelial cells (PMID: 39277687). Cultured cells expressing mutant *TUBB4B* were able to fold, form αβ-heterodimers, and co-assemble them into the endogenous microtubule lattice, however, the growth dynamics of the microtubules were consistently altered (PMID: 29198720). In conclusion, *TUBB4B* has a Definitive association with TUBB4B-related ciliopathy. This classification has been repeatedly demonstrated in both research and diagnostic settings, and has been upheld over time without the emergence of contradictory evidence. This classification was approved by the Motile Ciliopathy GCEP on April 10th, 2025 in collaboration with the Hearing Loss GCEP (SOP Version 11).

Leber congenital amaurosis with early-onset deafnessSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0060650

Submitter: Labcorp Genetics (formerly Invitae)

TUBB4B-related ciliopathySTRONG

Inheritance Pattern: AD

Disease ID:MONDO:1060115

Submitter: PanelApp Australia

Clinical Genomic Database (CGD)

Leber congenital amaurosis with early-onset deafnessAD

Manifestation: Audiologic/Otolaryngologic; Ophthalmologic

Intervention: Audiologic/Otolaryngologic

Rationale: Early recognition and treatment of hearing impairment may improve outcomes, including speech and language development

Refs: 29198720Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to TUBB4B variants in ClinVar

7 Conditions Cataloged
not providedTotal: 161
not specifiedTotal: 116
TUBB4B-related disorderTotal: 41
Leber congenital amaurosis with early-onset deafnessTotal: 7
Retinal disorderTotal: 3
Inborn genetic diseasesTotal: 2
Structural eye diseaseTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_006088.6. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
137
clinvar
3
clinvar
141
missense
2
clinvar
8
clinvar
33
clinvar
43
nonsense
1
clinvar
1
start loss
0
frameshift
2
clinvar
2
splice donor/acceptor (+/-2bp)
0
Total28371373187

Highest pathogenic variant AF is 0.000001368738

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 18 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_006088.6RefSeqNP_006079.14MANE Select
ENST00000340384.5EnsemblENSP00000341289.44MANE Select
ENST00000938213.1EnsemblENSP00000608272.14Standard
ENST00000938213.2EnsemblENSP00000608272.14Standard

Model Organisms & Knockout Phenotypes

Observed phenotypic effects in mouse and zebrafish models

Gene / ModelOrganismObserved Phenotype
tubb4bDanio rerio

Structure: otolith

Quality: malformed

abnormal

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Phagosome - Homo sapiens (human)
  • Gap junction - Homo sapiens (human)
  • Pathogenic Escherichia coli infection - Homo sapiens (human)
  • Pathogenic Escherichia coli infection
  • Parkin-Ubiquitin Proteasomal System pathway

Biological Process

  • G2/M transition of mitotic cell cycle
  • microtubule cytoskeleton organization
  • mitotic cell cycle
  • microtubule-based process
  • regulation of G2/M transition of mitotic cell cycle

Molecular Function

  • double-stranded RNA binding
  • GTPase activity
  • structural constituent of cytoskeleton
  • GTP binding
  • MHC class I protein binding

Cellular Component

  • extracellular region
  • nucleus
  • cytoplasm
  • cytosol
  • cytoskeleton

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000340384
Coding exons
4
Length
2495
Individuals with no LoFs
125444
Homozygous LoFs
0
Heterozygous LoFs
3
Defined
125447
p
0.0000120
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense4.50662760.2390.00001742955
Missense (PolyPhen)15121.340.123621379
Synonymous-9.112451192.060.00000851872
Loss of Function3.00214.20.1416.19e-7158

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.0000290.000029rare
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish0.0000460.000046rare
European (Non-Finnish)0.00000890.0000088rare
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.;
Disease
DISEASE: Leber congenital amaurosis with early-onset deafness (LCAEOD) [MIM:617879]: An autosomal dominant disease characterized by severe retinal degeneration and sensorineural hearing loss. Symptoms occur within the first decade of life. Onset at birth is observed in some patients. {ECO:0000269|PubMed:29198720}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Recessive Scores

pRec
0.388

Intolerance Scores

RVIS EVS
-1
RVIS percentile EVS
8.32

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.114

Gene Damage Prediction

AllRecessiveDominant
MendelianLowLowLow
Primary ImmunodeficiencyMediumLowMedium
CancerLowLowLow
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