UBALD1

UBA like domain containing 1

Basic information

Region (hg38): 16:4608883-4615027

Previous symbols: [ "FAM100A" ]

Links

ENSG00000153443 ∙ NCBI:124402 ∙ ∙ HGNC:29576 ∙ Uniprot:Q8TB05 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the UBALD1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the UBALD1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16			16
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	0	0

Variants in UBALD1

This is a list of pathogenic ClinVar variants found in the UBALD1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-4609650-T-C		not specified	Uncertain significance (Oct 30, 2023)
16-4609713-C-T		not specified	Uncertain significance (Oct 13, 2023)
16-4609752-G-T		not specified	Uncertain significance (Nov 21, 2023)
16-4609767-G-A		not specified	Uncertain significance (Jan 23, 2024)
16-4609775-G-A		not specified	Uncertain significance (Nov 13, 2024)
16-4609776-G-C		not specified	Uncertain significance (Mar 13, 2023)
16-4609778-G-T		not specified	Uncertain significance (Jan 15, 2025)
16-4609787-G-A		not specified	Uncertain significance (Jan 20, 2023)
16-4609808-G-A		not specified	Uncertain significance (Feb 18, 2025)
16-4609832-G-C		not specified	Uncertain significance (Oct 04, 2024)
16-4609842-G-C		not specified	Uncertain significance (Apr 19, 2025)
16-4609844-G-A		not specified	Uncertain significance (Aug 02, 2023)
16-4609862-G-A		not specified	Uncertain significance (Apr 02, 2025)
16-4609862-G-T		not specified	Uncertain significance (Jan 15, 2025)
16-4609863-C-T		not specified	Likely benign (Feb 12, 2025)
16-4609919-G-C		not specified	Uncertain significance (Dec 10, 2024)
16-4609936-G-C		not specified	Uncertain significance (Apr 28, 2022)
16-4609940-G-A		not specified	Uncertain significance (Mar 01, 2024)
16-4609981-C-T		not specified	Uncertain significance (Oct 04, 2022)
16-4610543-C-T		not specified	Uncertain significance (Dec 06, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
UBALD1	protein_coding	protein_coding	ENST00000283474	3	6145

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.803	0.192	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.32	55	90.3	0.609	0.00000513	1140
Missense in Polyphen		3	22.022	0.13623		316
Synonymous	-2.97	64	40.1	1.60	0.00000294	347
Loss of Function	2.15	0	5.38	0.00	2.33e-7	58

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• rvis_EVS: 0.26
• rvis_percentile_EVS: 70.06

Haploinsufficiency Scores

• pHI: 0.215
• hipred: N
• hipred_score: 0.329
• ghis: 0.431

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ubald1