UBL4B

ubiquitin like 4B

Basic information

Region (hg38): 1:110112443-110113947

Links

ENSG00000186150 ∙ NCBI:164153 ∙ OMIM:611127 ∙ HGNC:32309 ∙ Uniprot:Q8N7F7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the UBL4B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the UBL4B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			16	1		17
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	16	1	0

Variants in UBL4B

This is a list of pathogenic ClinVar variants found in the UBL4B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-110112598-A-C		not specified	Uncertain significance (May 13, 2024)
1-110112608-C-T		not specified	Likely benign (Jan 05, 2022)
1-110112632-G-A		not specified	Uncertain significance (Jun 07, 2024)
1-110112664-C-G		not specified	Uncertain significance (Jan 03, 2024)
1-110112671-G-A		not specified	Uncertain significance (Nov 09, 2022)
1-110112693-C-G		not specified	Uncertain significance (Nov 25, 2024)
1-110112716-T-C		not specified	Uncertain significance (Mar 14, 2023)
1-110112726-T-A		not specified	Uncertain significance (Jan 27, 2022)
1-110112745-A-G		not specified	Uncertain significance (Mar 31, 2023)
1-110112767-C-T		not specified	Uncertain significance (Jul 01, 2024)
1-110112820-C-G		not specified	Uncertain significance (Dec 16, 2023)
1-110112862-G-A		not specified	Uncertain significance (Sep 06, 2022)
1-110112895-C-T		not specified	Uncertain significance (Apr 25, 2023)
1-110112904-A-C		not specified	Uncertain significance (Jan 16, 2025)
1-110112959-C-A		not specified	Uncertain significance (Mar 24, 2023)
1-110112988-C-T		not specified	Uncertain significance (Dec 22, 2023)
1-110113018-T-G		not specified	Uncertain significance (Mar 24, 2023)
1-110113042-G-A		not specified	Uncertain significance (May 24, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
UBL4B	protein_coding	protein_coding	ENST00000334179	1	1508

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0300	0.610	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.247	87	93.7	0.928	0.00000523	1116
Missense in Polyphen		22	25.305	0.8694		342
Synonymous	0.135	41	42.1	0.974	0.00000227	356
Loss of Function	0.193	2	2.32	0.863	9.83e-8	28

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.0890

Intolerance Scores

• loftool: 0.524
• rvis_EVS: 0.08
• rvis_percentile_EVS: 60.09

Haploinsufficiency Scores

• pHI: 0.130
• hipred: N
• hipred_score: 0.123
• ghis: 0.418

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.694

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Ubl4b

Gene ontology

• Biological process: positive regulation of protein targeting to mitochondrion
• Cellular component: cytoplasm
• Molecular function: protein binding