UNC119B

unc-119 lipid binding chaperone B, the group of MicroRNA protein coding host genes

Basic information

Region (hg38): 12:120710458-120723640

Links

ENSG00000175970 ∙ NCBI:84747 ∙ ∙ HGNC:16488 ∙ Uniprot:A6NIH7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the UNC119B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the UNC119B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			14			14
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	14	0	0

Variants in UNC119B

This is a list of pathogenic ClinVar variants found in the UNC119B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-120710481-G-A		not specified	Uncertain significance (Jun 18, 2024)
12-120710481-G-T		not specified	Uncertain significance (Apr 29, 2024)
12-120710526-G-A		not specified	Uncertain significance (May 17, 2023)
12-120710526-G-C		not specified	Uncertain significance (Dec 14, 2021)
12-120710530-G-A		not specified	Uncertain significance (Jun 24, 2022)
12-120710583-C-A		not specified	Uncertain significance (Feb 23, 2023)
12-120710589-A-G		not specified	Uncertain significance (Jun 13, 2024)
12-120710647-C-T		not specified	Uncertain significance (Sep 16, 2021)
12-120710670-G-C		not specified	Uncertain significance (Jul 11, 2023)
12-120710679-C-T		not specified	Uncertain significance (Feb 12, 2024)
12-120710680-G-A		not specified	Uncertain significance (Mar 18, 2024)
12-120713280-T-C		not specified	Uncertain significance (Oct 20, 2024)
12-120713354-G-A		not specified	Uncertain significance (Jun 21, 2023)
12-120716681-C-T		not specified	Uncertain significance (Oct 26, 2022)
12-120716694-A-G		not specified	Uncertain significance (Nov 19, 2024)
12-120716706-C-T		not specified	Uncertain significance (Sep 17, 2021)
12-120716730-T-C		not specified	Uncertain significance (Apr 15, 2024)
12-120716881-C-T		not specified	Uncertain significance (Nov 26, 2024)
12-120716940-C-T		not specified	Uncertain significance (Jan 03, 2024)
12-120719935-A-G		not specified	Uncertain significance (Dec 05, 2022)
12-120719944-A-T		not specified	Uncertain significance (May 27, 2022)
12-120719977-A-G		not specified	Uncertain significance (May 25, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
UNC119B	protein_coding	protein_coding	ENST00000344651	5	13206

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.784	0.215	125735	0	5	125740	0.0000199

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.926	98	127	0.769	0.00000815	1626
Missense in Polyphen		47	69.584	0.67544		773
Synonymous	0.244	44	46.1	0.954	0.00000277	490
Loss of Function	2.54	1	9.42	0.106	5.63e-7	120

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000443	0.0000440
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Myristoyl-binding protein that acts as a cargo adapter: specifically binds the myristoyl moiety of a subset of N- terminally myristoylated proteins and is required for their localization. Binds myristoylated NPHP3 and plays a key role in localization of NPHP3 to the primary cilium membrane. Does not bind all myristoylated proteins. Probably plays a role in trafficking proteins in photoreceptor cells. {ECO:0000269|PubMed:22085962}.
• Pathway: Trafficking of myristoylated proteins to the cilium;Cargo trafficking to the periciliary membrane;Cilium Assembly;Organelle biogenesis and maintenance (Consensus)

Haploinsufficiency Scores

• pHI: 0.254
• hipred: Y
• hipred_score: 0.628
• ghis: 0.626

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.450

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Unc119b

Zebrafish Information Network

• Gene name: unc119.1
• Affected structure: whole organism
• Phenotype tag: abnormal
• Phenotype quality: curved ventral

Gene ontology

• Biological process: nervous system development;lipoprotein transport;cilium assembly
• Cellular component: cytosol;cilium;ciliary transition zone
• Molecular function: protein binding;lipid binding