USP17L1

ubiquitin specific peptidase 17 like family member 1

Basic information

Region (hg38): 8:7332387-7333979

Previous symbols: [ "USP17L1P" ]

Links

ENSG00000230549 ∙ NCBI:401447 ∙ ∙ HGNC:37182 ∙ Uniprot:Q7RTZ2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the USP17L1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the USP17L1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense				3		3
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	4	0

Variants in USP17L1

This is a list of pathogenic ClinVar variants found in the USP17L1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-7333183-C-T			Likely benign (Dec 01, 2022)
8-7333291-A-T			Likely benign (Nov 01, 2022)
8-7333568-C-T			Likely benign (Jan 01, 2023)
8-7333694-C-G			Likely benign (Dec 01, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes that may include cell proliferation, progression through the cell cycle, apoptosis, cell migration, and the cellular response to viral infection. {ECO:0000250}.
• Pathway: Post-translational protein modification;Metabolism of proteins;Ub-specific processing proteases;Deubiquitination (Consensus)

Gene ontology

• Biological process: ubiquitin-dependent protein catabolic process;apoptotic process;protein deubiquitination;regulation of apoptotic process
• Cellular component: nucleus;endoplasmic reticulum
• Molecular function: cysteine-type endopeptidase activity;thiol-dependent ubiquitin-specific protease activity