USP17L4

ubiquitin specific peptidase 17 like family member 4

Basic information

Region (hg38): 8:7337115-7338707

Links

ENSG00000236125

∙ NCBI:645402 ∙ ∙ HGNC:37176 ∙ Uniprot:A6NCW7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the USP17L4 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the USP17L4 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense				1 clinvar		1
nonsense				1 clinvar		1
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	2	0

Variants in USP17L4

This is a list of pathogenic ClinVar variants found in the USP17L4 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-7337236-C-A			Likely benign (Jan 01, 2023)	2658359
8-7338417-G-A			Likely benign (Feb 01, 2023)	2658360

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Pathway: Post-translational protein modification;Metabolism of proteins;Ub-specific processing proteases;Deubiquitination (Consensus)

Gene ontology

Biological process: protein deubiquitination;regulation of apoptotic process
Cellular component: nucleus;endoplasmic reticulum
Molecular function: cysteine-type endopeptidase activity;thiol-dependent ubiquitin-specific protease activity