VSIG10L2

V-set and immunoglobulin domain containing 10 like 2

Basic information

Region (hg38): 11:125946043-125958647

Links

ENSG00000283703 ∙ NCBI:338667 ∙ ∙ HGNC:27879 ∙ Uniprot:P0DP72 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the VSIG10L2 gene.

• not provided (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the VSIG10L2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2		2
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	2	0

Variants in VSIG10L2

This is a list of pathogenic ClinVar variants found in the VSIG10L2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-125954118-C-T			Likely benign (Apr 01, 2023)
11-125954217-T-C			Likely benign (Jul 01, 2022)
11-125956807-G-A		Holoprosencephaly sequence	Benign (Jun 14, 2016)
11-125956845-T-C		Holoprosencephaly 11	Uncertain significance (Jan 13, 2018)
11-125956862-C-T		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125956879-C-A		Holoprosencephaly 11	Uncertain significance (Jan 13, 2018)
11-125956890-G-A		Holoprosencephaly 11	Benign (Jan 12, 2018)
11-125956935-C-T		Holoprosencephaly 11	Uncertain significance (Jan 12, 2018)
11-125956942-G-A		Holoprosencephaly 11	Benign (Jan 12, 2018)
11-125956970-G-C		Holoprosencephaly 11	Likely benign (Jan 12, 2018)
11-125956971-C-T		Holoprosencephaly 11	Uncertain significance (Jan 12, 2018)
11-125957023-A-G		Holoprosencephaly 11	Likely benign (Jan 12, 2018)
11-125957026-C-T		Holoprosencephaly 11	Uncertain significance (Jan 12, 2018)
11-125957058-A-C		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957080-C-A		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957112-C-T		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957165-C-T		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957177-G-A		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957287-A-G		Holoprosencephaly 11	Uncertain significance (Feb 09, 2018)
11-125957314-G-C		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957332-G-A		Holoprosencephaly 11	Uncertain significance (Jan 13, 2018)
11-125957418-CAG-C		Holoprosencephaly sequence	Uncertain significance (Jun 14, 2016)
11-125957428-T-C		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957452-A-G		Holoprosencephaly 11	Benign (Jan 13, 2018)
11-125957461-G-A		Holoprosencephaly 11	Uncertain significance (Jan 13, 2018)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP

Mouse Genome Informatics

• Gene name: Gm1113

Gene ontology

• Cellular component: integral component of membrane