XKR5

protein-coding

XK related 5, the group of XK related family

Gene summary

Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Jul 2025]

MANE transcript

NM_207411.5

Inheritance

—

ClinVar variants

U:97B:3

Top phenotype

—

Max pathogenic AF

—

Genomic locus

chr8:6,808,517-6,835,524

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~27.0 kb
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GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

No GenCC data available for this gene.

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to XKR5 variants in ClinVar

2 Conditions Cataloged
not specifiedTotal: 96
not providedTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_207411.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
1
missense
96
clinvar
2
clinvar
98
nonsense
0
start loss
0
frameshift
0
splice donor/acceptor (+/-2bp)
1
clinvar
1
Total009730100
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 12 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_207411.5RefSeqNP_997294.37MANE Select
ENST00000618742.3EnsemblENSP00000483879.17MANE Select
NM_001289973.2RefSeqNP_001276902.14Standard
ENST00000618990.4EnsemblENSP00000485506.13Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Cellular Component

  • membrane
  • integral component of membrane

dbNSFP Gene Annotations

Source: dbNSFP

For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.