ZBTB10

zinc finger and BTB domain containing 10, the group of Zinc fingers C2H2-type|BTB domain containing

Basic information

Region (hg38): 8:80485618-80526265

Links

ENSG00000205189 ∙ NCBI:65986 ∙ OMIM:618576 ∙ HGNC:30953 ∙ Uniprot:Q96DT7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZBTB10 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZBTB10 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			42	2		44
nonsense			1			1
start loss						0
frameshift						0
inframe indel					1	1
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	43	2	1

Variants in ZBTB10

This is a list of pathogenic ClinVar variants found in the ZBTB10 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-80486812-TGTC-T			Benign (Mar 03, 2015)
8-80486872-C-T		not specified	Uncertain significance (Jun 20, 2024)
8-80486887-C-T		not specified	Uncertain significance (Apr 07, 2023)
8-80486889-A-G		not specified	Uncertain significance (Apr 07, 2023)
8-80486890-C-T		not specified	Uncertain significance (Apr 07, 2023)
8-80486896-A-G		not specified	Uncertain significance (Sep 07, 2022)
8-80486900-C-A		not specified	Uncertain significance (Sep 06, 2022)
8-80486950-C-A		not specified	Uncertain significance (Mar 12, 2024)
8-80486955-C-T		not specified	Uncertain significance (May 03, 2023)
8-80486959-C-T		not specified	Uncertain significance (Aug 02, 2021)
8-80486992-G-T		not specified	Uncertain significance (May 03, 2023)
8-80487022-G-A		not specified	Uncertain significance (Dec 19, 2023)
8-80487027-G-A		not specified	Uncertain significance (Feb 14, 2023)
8-80487043-A-T		not specified	Uncertain significance (Aug 16, 2021)
8-80487046-C-T		not specified	Uncertain significance (Aug 17, 2022)
8-80487049-C-T		not specified	Uncertain significance (Jun 24, 2022)
8-80487132-G-A		not specified	Uncertain significance (Jun 23, 2021)
8-80487156-G-C		not specified	Uncertain significance (Jul 06, 2021)
8-80487195-G-A		not specified	Uncertain significance (Dec 16, 2023)
8-80487255-C-A		not specified	Uncertain significance (Mar 11, 2024)
8-80487271-A-G		not specified	Uncertain significance (Jun 01, 2023)
8-80487276-C-T		8 conditions	Uncertain significance (Apr 20, 2022)
8-80487283-C-A		not specified	Uncertain significance (May 03, 2023)
8-80487288-A-G		not specified	Likely benign (Apr 07, 2023)
8-80487296-T-G		not specified	Likely benign (Apr 07, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZBTB10	protein_coding	protein_coding	ENST00000430430	6	40647

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.991	0.00933	124612	0	3	124615	0.0000120

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.02	316	434	0.728	0.0000207	5654
Missense in Polyphen		69	149.42	0.46178		1964
Synonymous	-2.15	201	166	1.21	0.00000814	1676
Loss of Function	4.56	4	31.7	0.126	0.00000174	393

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000290	0.0000290
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000886	0.00000885
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Recessive Scores

• pRec: 0.0978

Intolerance Scores

• loftool: 0.229
• rvis_EVS: -0.16
• rvis_percentile_EVS: 41.91

Haploinsufficiency Scores

• pHI: 0.673
• hipred: Y
• hipred_score: 0.646
• ghis: 0.616

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.261

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zbtb10

Gene ontology

• Cellular component: nucleoplasm
• Molecular function: DNA binding;protein binding;metal ion binding