ZBTB22

zinc finger and BTB domain containing 22, the group of BTB domain containing|Zinc fingers C2H2-type

Basic information

Region (hg38): 6:33314406-33317942

Previous symbols: [ "ZNF297" ]

Links

ENSG00000236104 ∙ ∙ OMIM:611439 ∙ HGNC:13085 ∙ Uniprot:O15209 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZBTB22 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZBTB22 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			20		1	21
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	0	1

Variants in ZBTB22

This is a list of pathogenic ClinVar variants found in the ZBTB22 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-33315026-C-T		not specified	Uncertain significance (Feb 28, 2023)
6-33315029-C-G		not specified	Uncertain significance (Aug 08, 2022)
6-33315044-T-C		not specified	Uncertain significance (Apr 06, 2024)
6-33315091-G-A		not specified	Uncertain significance (Aug 28, 2023)
6-33315143-A-T		not specified	Uncertain significance (Aug 02, 2021)
6-33315194-C-T		not specified	Uncertain significance (Jun 10, 2022)
6-33315215-G-A		not specified	Uncertain significance (Jun 21, 2023)
6-33315490-C-T		not specified	Uncertain significance (Oct 14, 2023)
6-33315518-G-A		not specified	Uncertain significance (Feb 07, 2023)
6-33315523-C-T		not specified	Uncertain significance (Jun 22, 2021)
6-33315528-G-C		not specified	Uncertain significance (Jan 31, 2024)
6-33315581-C-T		not specified	Uncertain significance (Mar 14, 2023)
6-33315630-G-C		not specified	Uncertain significance (Sep 22, 2023)
6-33315674-G-A		not specified	Uncertain significance (Oct 04, 2022)
6-33315691-G-C		not specified	Uncertain significance (Apr 12, 2024)
6-33315695-C-G		not specified	Uncertain significance (Jul 12, 2023)
6-33315745-C-A		not specified	Uncertain significance (Jan 19, 2022)
6-33315755-C-T		not specified	Uncertain significance (Oct 24, 2023)
6-33315847-C-T		not specified	Uncertain significance (May 17, 2023)
6-33315899-G-C		not specified	Uncertain significance (May 18, 2023)
6-33315971-C-A		not specified	Uncertain significance (Oct 21, 2021)
6-33315989-T-C		not specified	Benign (Mar 28, 2016)
6-33316330-C-T		not specified	Uncertain significance (Jun 09, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZBTB22	protein_coding	protein_coding	ENST00000431845	1	3537

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.219	0.779	125732	0	14	125746	0.0000557

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.86	282	385	0.733	0.0000227	4052
Missense in Polyphen		59	142.49	0.41407		1553
Synonymous	-0.142	169	167	1.01	0.0000105	1458
Loss of Function	2.75	4	15.8	0.253	0.00000112	144

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000188	0.000181
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.0000466	0.0000462
European (Non-Finnish)	0.0000617	0.0000615
Middle Eastern	0.00	0.00
South Asian	0.0000653	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Recessive Scores

• pRec: 0.0941

Intolerance Scores

• loftool: 0.459
• rvis_EVS: 0.18
• rvis_percentile_EVS: 66.07

Haploinsufficiency Scores

• pHI: 0.168
• hipred: Y
• hipred_score: 0.572
• ghis: 0.506

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.912

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zbtb22

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding