ZBTB44

zinc finger and BTB domain containing 44, the group of Zinc fingers C2H2-type|BTB domain containing

Basic information

Region (hg38): 11:130226677-130314917

Previous symbols: [ "BTBD15" ]

Links

ENSG00000196323 ∙ NCBI:29068 ∙ ∙ HGNC:25001 ∙ Uniprot:Q8NCP5 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZBTB44 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZBTB44 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			29			29
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	29	0	0

Variants in ZBTB44

This is a list of pathogenic ClinVar variants found in the ZBTB44 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-130238482-C-T		not specified	Uncertain significance (Jan 22, 2024)
11-130238525-C-T		not specified	Uncertain significance (Jul 14, 2021)
11-130238591-A-G		not specified	Uncertain significance (Feb 14, 2023)
11-130238593-T-C		not specified	Uncertain significance (Jan 23, 2024)
11-130238593-T-G		not specified	Uncertain significance (Dec 15, 2023)
11-130238600-T-C		not specified	Uncertain significance (Sep 26, 2024)
11-130239848-G-A		not specified	Uncertain significance (Nov 16, 2024)
11-130239872-T-C		not specified	Uncertain significance (Oct 19, 2024)
11-130260870-T-A		not specified	Uncertain significance (May 31, 2023)
11-130260912-G-A		not specified	Uncertain significance (Jul 11, 2023)
11-130260971-C-A		not specified	Uncertain significance (Nov 15, 2021)
11-130260975-T-C		not specified	Uncertain significance (Oct 27, 2022)
11-130260979-C-A		not specified	Uncertain significance (Jul 17, 2024)
11-130261003-C-T		not specified	Uncertain significance (Jan 31, 2024)
11-130261066-C-G		not specified	Uncertain significance (Mar 22, 2023)
11-130261068-T-A		not specified	Uncertain significance (Jul 14, 2022)
11-130261087-C-A		not specified	Uncertain significance (Nov 09, 2021)
11-130261117-T-C		not specified	Uncertain significance (Dec 03, 2021)
11-130261126-T-C		not specified	Uncertain significance (Jun 21, 2021)
11-130261190-A-C		not specified	Uncertain significance (Oct 05, 2023)
11-130261266-C-A		not specified	Uncertain significance (Dec 09, 2023)
11-130261305-A-C		not specified	Uncertain significance (Sep 22, 2023)
11-130261348-C-G		not specified	Uncertain significance (Jun 10, 2022)
11-130261354-T-C		not specified	Uncertain significance (Feb 12, 2024)
11-130261376-C-G		not specified	Uncertain significance (May 22, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZBTB44	protein_coding	protein_coding	ENST00000525842	5	88010

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.999	0.000706	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.87	166	249	0.666	0.0000137	2963
Missense in Polyphen		55	117.21	0.46926		1440
Synonymous	-0.361	92	87.7	1.05	0.00000459	880
Loss of Function	4.24	0	20.9	0.00	0.00000142	219

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. {ECO:0000250}.

Recessive Scores

• pRec: 0.107

Intolerance Scores

• rvis_EVS: -0.45
• rvis_percentile_EVS: 24.19

Haploinsufficiency Scores

• pHI: 0.0995
• hipred: Y
• hipred_score: 0.580
• ghis: 0.617

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.702

Mouse Genome Informatics

• Gene name: Zbtb44

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding