ZBTB8B

zinc finger and BTB domain containing 8B, the group of Zinc fingers C2H2-type|BTB domain containing

Basic information

Region (hg38): 1:32465072-32496686

Links

ENSG00000273274 ∙ NCBI:728116 ∙ ∙ HGNC:37057 ∙ Uniprot:Q8NAP8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZBTB8B gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZBTB8B gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22	2		24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	22	2	0

Variants in ZBTB8B

This is a list of pathogenic ClinVar variants found in the ZBTB8B region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-32470733-G-A		not specified	Uncertain significance (May 18, 2023)
1-32470860-T-C		not specified	Uncertain significance (Jan 19, 2024)
1-32470943-A-G		not specified	Uncertain significance (Mar 16, 2024)
1-32471096-A-T		not specified	Uncertain significance (Aug 17, 2022)
1-32471124-G-T		not specified	Uncertain significance (May 30, 2023)
1-32471166-A-T		not specified	Likely benign (Jul 21, 2022)
1-32471175-A-G		not specified	Uncertain significance (Oct 06, 2023)
1-32471301-G-C		not specified	Uncertain significance (Nov 22, 2021)
1-32471303-A-G		not specified	Uncertain significance (Jul 06, 2021)
1-32471379-C-T		not specified	Uncertain significance (Dec 13, 2022)
1-32471396-G-A		not specified	Likely benign (Apr 18, 2023)
1-32471436-C-T		not specified	Uncertain significance (Oct 27, 2022)
1-32471504-G-A		not specified	Uncertain significance (Mar 31, 2022)
1-32471577-T-A		not specified	Uncertain significance (Jul 13, 2022)
1-32471589-A-G		not specified	Uncertain significance (Apr 19, 2024)
1-32471608-G-C		not specified	Uncertain significance (Jul 13, 2022)
1-32480980-C-T		not specified	Uncertain significance (Oct 26, 2022)
1-32480981-G-A		not specified	Uncertain significance (Sep 14, 2023)
1-32485116-C-T		not specified	Uncertain significance (Jan 22, 2024)
1-32485153-C-T		not specified	Uncertain significance (Oct 26, 2022)
1-32485185-G-A		not specified	Uncertain significance (Mar 29, 2022)
1-32485243-T-G		not specified	Uncertain significance (Oct 06, 2021)
1-32485270-C-A		not specified	Uncertain significance (Dec 15, 2023)
1-32485288-A-G		not specified	Uncertain significance (Aug 12, 2021)
1-32485344-G-A		not specified	Uncertain significance (Dec 22, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZBTB8B	protein_coding	protein_coding	ENST00000609129	3	31618

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00125	0.963	0	0	0	0	0.00

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.62	172	300	0.574	0.0000184	3262
Missense in Polyphen		49	95.889	0.51101		1118
Synonymous	1.90	99	126	0.785	0.00000862	963
Loss of Function	1.85	7	14.6	0.478	8.67e-7	180

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• rvis_EVS: 0.13
• rvis_percentile_EVS: 62.74

Haploinsufficiency Scores

• hipred: N
• hipred_score: 0.112

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• gene_indispensability_pred: N
• gene_indispensability_score: 0.176

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zbtb8b

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding