ZFP14

ZFP14 zinc finger protein, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:36334453-36379201

Links

ENSG00000142065 ∙ NCBI:57677 ∙ OMIM:620163 ∙ HGNC:29312 ∙ Uniprot:Q9HCL3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZFP14 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZFP14 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			21		2	23
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	21	0	2

Variants in ZFP14

This is a list of pathogenic ClinVar variants found in the ZFP14 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-36340280-C-A		not specified	Uncertain significance (Feb 16, 2023)
19-36340553-C-G		not specified	Uncertain significance (Jan 06, 2023)
19-36340565-C-G		not specified	Uncertain significance (Aug 13, 2021)
19-36340606-C-G		not specified	Uncertain significance (Sep 22, 2022)
19-36340610-T-C		not specified	Uncertain significance (Dec 19, 2023)
19-36340673-G-A		not specified	Uncertain significance (Oct 18, 2021)
19-36340714-T-A		not specified	Uncertain significance (Feb 10, 2023)
19-36340801-C-T		not specified	Uncertain significance (Aug 11, 2022)
19-36340835-G-T		not specified	Uncertain significance (May 01, 2024)
19-36341048-C-G			Benign (Oct 24, 2018)
19-36341072-C-T		not specified	Uncertain significance (Nov 30, 2021)
19-36341171-G-T		not specified	Uncertain significance (Dec 01, 2023)
19-36341227-T-C		not specified	Uncertain significance (Sep 20, 2023)
19-36341276-G-A		not specified	Uncertain significance (May 31, 2023)
19-36341279-G-A		not specified	Uncertain significance (Jun 07, 2024)
19-36341421-T-G		not specified	Uncertain significance (Jun 04, 2024)
19-36341503-C-T		not specified	Uncertain significance (May 31, 2023)
19-36341525-A-T			Benign (Oct 24, 2018)
19-36341569-G-T		not specified	Uncertain significance (Apr 14, 2022)
19-36341590-T-A		not specified	Uncertain significance (Nov 17, 2022)
19-36360504-T-C		not specified	Uncertain significance (Aug 10, 2021)
19-36362151-C-G		not specified	Uncertain significance (May 17, 2023)
19-36362198-T-C		not specified	Uncertain significance (Feb 14, 2023)
19-36362237-C-G		not specified	Uncertain significance (Aug 11, 2022)
19-36367888-G-A		not specified	Uncertain significance (May 26, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZFP14	protein_coding	protein_coding	ENST00000270001	4	42940

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000215	0.996	125724	0	19	125743	0.0000756

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.08	184	282	0.652	0.0000137	3552
Missense in Polyphen		79	141.23	0.55939		1767
Synonymous	2.27	65	92.8	0.700	0.00000443	905
Loss of Function	2.52	10	23.1	0.433	0.00000111	323

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000244	0.000242
Ashkenazi Jewish	0.00	0.00
East Asian	0.000110	0.000109
Finnish	0.00	0.00
European (Non-Finnish)	0.0000792	0.0000791
Middle Eastern	0.000110	0.000109
South Asian	0.0000990	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.751
• rvis_EVS: 0.31
• rvis_percentile_EVS: 72.23

Haploinsufficiency Scores

• pHI: 0.268
• hipred: N
• hipred_score: 0.326
• ghis: 0.470

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.170

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp14
• Phenotype: hematopoietic system phenotype; cardiovascular system phenotype (the observable morphological and physiological characteristics of the mammalian heart, blood vessels, or circulatory system that are manifested through development and lifespan); growth/size/body region phenotype; skeleton phenotype; immune system phenotype

Gene ontology

• Biological process: blastocyst hatching;regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding