ZFP37

ZFP37 zinc finger protein, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 9:113038376-113056759

Links

ENSG00000136866 ∙ NCBI:7539 ∙ OMIM:602951 ∙ HGNC:12863 ∙ Uniprot:Q9Y6Q3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZFP37 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZFP37 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			30	1		31
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	30	1	0

Variants in ZFP37

This is a list of pathogenic ClinVar variants found in the ZFP37 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-113042732-T-G		not specified	Uncertain significance (Sep 29, 2022)
9-113042821-T-G		not specified	Uncertain significance (Dec 17, 2021)
9-113042840-C-T		not specified	Uncertain significance (Aug 23, 2021)
9-113042849-A-G		not specified	Uncertain significance (Oct 31, 2022)
9-113042868-C-T		not specified	Uncertain significance (Feb 21, 2024)
9-113042876-G-T		not specified	Uncertain significance (May 14, 2024)
9-113042883-C-G		not specified	Uncertain significance (Apr 29, 2024)
9-113042970-A-G		not specified	Uncertain significance (Dec 01, 2022)
9-113042999-G-A		not specified	Uncertain significance (Aug 23, 2021)
9-113043045-C-T		not specified	Uncertain significance (May 18, 2023)
9-113043080-C-T		not specified	Uncertain significance (Dec 01, 2022)
9-113043113-G-A		not specified	Uncertain significance (Dec 15, 2022)
9-113043137-C-T		not specified	Uncertain significance (May 22, 2023)
9-113043195-G-A		not specified	Uncertain significance (Nov 17, 2023)
9-113043222-A-G		not specified	Uncertain significance (Jun 17, 2024)
9-113043228-T-C		not specified	Uncertain significance (Aug 22, 2023)
9-113043230-C-T		not specified	Uncertain significance (Feb 16, 2023)
9-113043278-G-A		not specified	Uncertain significance (Jun 02, 2023)
9-113043290-T-C		not specified	Uncertain significance (Nov 18, 2022)
9-113043393-C-T		not specified	Uncertain significance (Sep 21, 2023)
9-113043530-G-A		not specified	Uncertain significance (Feb 01, 2023)
9-113043585-C-T		not specified	Uncertain significance (Sep 01, 2021)
9-113043862-T-A		not specified	Uncertain significance (Jun 05, 2023)
9-113043946-C-A		not specified	Likely benign (Jun 09, 2022)
9-113044154-C-G		not specified	Uncertain significance (Oct 05, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZFP37	protein_coding	protein_coding	ENST00000374227	4	18380

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
6.12e-13	0.0606	125675	0	72	125747	0.000286

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.350	300	318	0.945	0.0000142	4189
Missense in Polyphen		112	127.48	0.87855		1663
Synonymous	-0.513	124	117	1.06	0.00000552	1101
Loss of Function	0.403	20	22.0	0.907	0.00000102	353

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000319	0.000319
Ashkenazi Jewish	0.000497	0.000496
East Asian	0.000272	0.000272
Finnish	0.00	0.00
European (Non-Finnish)	0.000300	0.000299
Middle Eastern	0.000272	0.000272
South Asian	0.000558	0.000555
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0625

Intolerance Scores

• loftool: 0.862
• rvis_EVS: 0.26
• rvis_percentile_EVS: 70.52

Haploinsufficiency Scores

• pHI: 0.0726
• hipred: N
• hipred_score: 0.123
• ghis: 0.473

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp37

Gene ontology

• Biological process: regulation of transcription, DNA-templated;regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;DNA-binding transcription factor activity;zinc ion binding