ZFP82

ZFP82 zinc finger protein, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:36383120-36418644

Previous symbols: [ "ZNF545" ]

Links

ENSG00000181007 ∙ NCBI:284406 ∙ ∙ HGNC:28682 ∙ Uniprot:Q8N141 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZFP82 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZFP82 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			24			24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	0	0

Variants in ZFP82

This is a list of pathogenic ClinVar variants found in the ZFP82 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-36392920-C-T		not specified	Uncertain significance (Jan 23, 2024)
19-36392929-T-C		not specified	Uncertain significance (Nov 30, 2022)
19-36392930-G-C		not specified	Uncertain significance (Dec 26, 2023)
19-36393163-G-T		not specified	Uncertain significance (Nov 23, 2021)
19-36393220-T-C		not specified	Uncertain significance (Jan 10, 2023)
19-36393277-G-A		not specified	Uncertain significance (Nov 07, 2023)
19-36393309-C-G		not specified	Uncertain significance (Nov 20, 2023)
19-36393309-C-T		not specified	Uncertain significance (Feb 06, 2024)
19-36393387-G-C		not specified	Uncertain significance (Feb 27, 2024)
19-36393556-C-T		not specified	Uncertain significance (Jun 28, 2024)
19-36393579-T-C		not specified	Uncertain significance (Aug 27, 2024)
19-36393589-C-T		not specified	Uncertain significance (Nov 27, 2023)
19-36393597-T-C		not specified	Uncertain significance (Jan 23, 2024)
19-36393736-C-G		not specified	Uncertain significance (Mar 06, 2025)
19-36393858-T-C		not specified	Uncertain significance (Mar 01, 2023)
19-36393861-T-C		not specified	Uncertain significance (Feb 10, 2025)
19-36393862-G-A		not specified	Uncertain significance (Jun 07, 2023)
19-36393892-A-G		not specified	Uncertain significance (Dec 28, 2024)
19-36393960-A-G		not specified	Uncertain significance (Nov 10, 2024)
19-36393981-T-A		not specified	Uncertain significance (May 30, 2023)
19-36393982-C-T		not specified	Uncertain significance (Jan 26, 2022)
19-36394097-C-G		not specified	Uncertain significance (Jun 16, 2024)
19-36405591-C-G		not specified	Uncertain significance (Jan 30, 2024)
19-36405619-G-T		not specified	Uncertain significance (Mar 14, 2025)
19-36407969-T-G		not specified	Uncertain significance (Jun 05, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZFP82	protein_coding	protein_coding	ENST00000392161	4	35537

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.579	0.421	125719	0	27	125746	0.000107

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.85	193	280	0.688	0.0000140	3537
Missense in Polyphen		86	138.84	0.61942		1744
Synonymous	1.73	75	96.7	0.776	0.00000489	929
Loss of Function	3.64	5	24.4	0.205	0.00000138	319

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000268	0.000268
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.000370	0.000370
European (Non-Finnish)	0.0000704	0.0000703
Middle Eastern	0.0000544	0.0000544
South Asian	0.0000980	0.0000980
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Intolerance Scores

• loftool: 0.446
• rvis_EVS: -0.67
• rvis_percentile_EVS: 15.62

Haploinsufficiency Scores

• pHI: 0.211
• hipred: Y
• hipred_score: 0.520
• ghis: 0.623

Essentials

• essential_gene_CRISPR: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.298

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp82

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding