ZNF101

zinc finger protein 101, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:19668796-19683509

Links

ENSG00000181896 ∙ NCBI:94039 ∙ OMIM:603983 ∙ HGNC:12881 ∙ Uniprot:Q8IZC7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF101 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF101 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22	2		24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			2			2
Total	0	0	24	2	0

Variants in ZNF101

This is a list of pathogenic ClinVar variants found in the ZNF101 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-19677883-A-G		not specified	Uncertain significance (Jul 12, 2023)
19-19677920-G-T		not specified	Uncertain significance (Jun 29, 2023)
19-19677953-T-G		not specified	Uncertain significance (Sep 27, 2021)
19-19679305-G-A		not specified	Uncertain significance (Jan 04, 2024)
19-19679326-C-A		not specified	Uncertain significance (Jun 18, 2021)
19-19679326-C-T		not specified	Uncertain significance (Aug 04, 2021)
19-19679392-G-C		not specified	Uncertain significance (Sep 16, 2021)
19-19679464-C-T		not specified	Uncertain significance (Jul 11, 2023)
19-19679483-G-A		not specified	Uncertain significance (Oct 27, 2022)
19-19679489-G-C		not specified	Uncertain significance (Mar 21, 2022)
19-19679533-A-G		not specified	Likely benign (Nov 21, 2023)
19-19679627-G-A		not specified	Uncertain significance (Aug 08, 2023)
19-19679659-C-T		not specified	Uncertain significance (Dec 14, 2021)
19-19679719-G-A		not specified	Uncertain significance (Oct 26, 2021)
19-19679744-C-T		not specified	Uncertain significance (Jan 24, 2023)
19-19679783-C-T		not specified	Uncertain significance (Mar 29, 2022)
19-19679801-A-G		not specified	Uncertain significance (Sep 09, 2021)
19-19679818-G-A		not specified	Uncertain significance (May 31, 2023)
19-19679819-C-G		not specified	Uncertain significance (Jun 22, 2023)
19-19679854-A-G		not specified	Uncertain significance (Feb 28, 2023)
19-19679890-G-C		not specified	Uncertain significance (Feb 13, 2024)
19-19679920-G-A		not specified	Likely benign (Feb 24, 2022)
19-19679921-A-C		not specified	Uncertain significance (May 02, 2024)
19-19679939-A-G		not specified	Uncertain significance (Nov 22, 2022)
19-19679999-C-A		not specified	Uncertain significance (Jan 23, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF101	protein_coding	protein_coding	ENST00000592502	4	14714

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.772	0.221	125739	0	1	125740	0.00000398

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.981	199	242	0.823	0.0000131	2872
Missense in Polyphen		53	60.276	0.87929		777
Synonymous	0.506	81	87.0	0.931	0.00000478	799
Loss of Function	2.05	0	4.89	0.00	2.08e-7	55

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000879	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0913

Intolerance Scores

• loftool: 0.861
• rvis_EVS: 0.11
• rvis_percentile_EVS: 61.91

Haploinsufficiency Scores

• pHI: 0.110
• hipred: N
• hipred_score: 0.112
• ghis: 0.495

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.982

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding