ZNF132

zinc finger protein 132, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:58432814-58440153

Links

ENSG00000131849 ∙ NCBI:7691 ∙ OMIM:604074 ∙ HGNC:12916 ∙ Uniprot:P52740 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF132 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF132 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				2		2
missense			70	4		74
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	70	6	0

Variants in ZNF132

This is a list of pathogenic ClinVar variants found in the ZNF132 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-58433408-C-G		not specified	Uncertain significance (Oct 10, 2023)
19-58433430-G-A		not specified	Uncertain significance (May 17, 2023)
19-58433444-C-G		not specified	Uncertain significance (Oct 09, 2024)
19-58433481-A-G		not specified	Uncertain significance (Apr 23, 2024)
19-58433507-T-C		not specified	Uncertain significance (Jun 22, 2021)
19-58433522-T-C		not specified	Uncertain significance (Feb 12, 2024)
19-58433555-C-T		not specified	Uncertain significance (Jun 21, 2021)
19-58433608-G-A			Likely benign (Aug 01, 2022)
19-58433615-C-T		not specified	Uncertain significance (May 11, 2022)
19-58433639-C-T		not specified	Uncertain significance (Aug 12, 2021)
19-58433685-T-C		not specified	Uncertain significance (Dec 10, 2024)
19-58433721-C-G		not specified	Uncertain significance (Jun 22, 2021)
19-58433739-T-C		not specified	Uncertain significance (Apr 24, 2023)
19-58433755-T-A		not specified	Uncertain significance (Jul 20, 2022)
19-58433817-A-G		not specified	Uncertain significance (Dec 01, 2022)
19-58433895-A-G		not specified	Uncertain significance (Dec 23, 2023)
19-58433988-G-C		not specified	Uncertain significance (Jun 10, 2024)
19-58433999-G-A		not specified	Uncertain significance (Sep 22, 2023)
19-58433999-G-C		not specified	Uncertain significance (Oct 09, 2024)
19-58434038-C-A		not specified	Uncertain significance (Jan 09, 2024)
19-58434042-A-C		not specified	Uncertain significance (Aug 14, 2024)
19-58434042-A-T		not specified	Uncertain significance (May 04, 2023)
19-58434119-T-C		not specified	Uncertain significance (Aug 12, 2024)
19-58434167-G-T		not specified	Uncertain significance (Jun 07, 2024)
19-58434198-A-G		not specified	Uncertain significance (May 05, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF132	protein_coding	protein_coding	ENST00000254166	3	7409

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.03e-12	0.0816	125638	0	110	125748	0.000437

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.600	397	365	1.09	0.0000178	4722
Missense in Polyphen		107	107.02	0.99986		1407
Synonymous	-0.454	137	130	1.05	0.00000643	1272
Loss of Function	0.514	20	22.6	0.884	0.00000122	297

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000551	0.000551
Ashkenazi Jewish	0.00188	0.00189
East Asian	0.000109	0.000109
Finnish	0.000139	0.000139
European (Non-Finnish)	0.000501	0.000501
Middle Eastern	0.000109	0.000109
South Asian	0.000401	0.000392
Other	0.000651	0.000652

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Recessive Scores

• pRec: 0.0973

Intolerance Scores

• loftool: 0.798
• rvis_EVS: -0.42
• rvis_percentile_EVS: 25.79

Haploinsufficiency Scores

• pHI: 0.139
• hipred: N
• hipred_score: 0.112
• ghis: 0.551

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0725

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;DNA-binding transcription factor activity;metal ion binding