ZNF212

zinc finger protein 212, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 7:149239651-149255606

Links

ENSG00000170260 ∙ NCBI:7988 ∙ OMIM:602386 ∙ HGNC:13004 ∙ Uniprot:Q9UDV6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF212 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF212 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			27	4		31
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	27	5	0

Variants in ZNF212

This is a list of pathogenic ClinVar variants found in the ZNF212 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-149239794-C-T		not specified	Uncertain significance (Feb 14, 2024)
7-149239795-C-T		not specified	Uncertain significance (Oct 29, 2021)
7-149239800-C-T		not specified	Uncertain significance (Jan 26, 2023)
7-149250163-G-A		not specified	Uncertain significance (Apr 13, 2023)
7-149250172-G-A		not specified	Uncertain significance (Jun 07, 2022)
7-149250304-C-G		not specified	Uncertain significance (Jun 10, 2024)
7-149250315-C-T		not specified	Uncertain significance (Feb 21, 2024)
7-149250372-G-A		not specified	Uncertain significance (Jan 03, 2024)
7-149250379-T-C		not specified	Likely benign (Jun 11, 2021)
7-149250380-G-A		not specified	Uncertain significance (Jun 11, 2021)
7-149250419-C-T			Likely benign (Jul 01, 2022)
7-149250447-G-C		not specified	Uncertain significance (Dec 22, 2023)
7-149250448-G-T		not specified	Uncertain significance (Dec 22, 2023)
7-149250492-A-G		not specified	Uncertain significance (Jul 19, 2023)
7-149250507-A-T		not specified	Uncertain significance (Sep 25, 2023)
7-149250523-C-G		not specified	Uncertain significance (Oct 13, 2023)
7-149250708-G-A		not specified	Uncertain significance (Apr 15, 2024)
7-149252733-C-T		not specified	Uncertain significance (May 17, 2023)
7-149253606-C-T		not specified	Likely benign (Feb 03, 2022)
7-149253610-C-T		not specified	Uncertain significance (Dec 03, 2021)
7-149253634-G-A		not specified	Uncertain significance (Dec 23, 2023)
7-149253698-T-A		not specified	Uncertain significance (Nov 28, 2023)
7-149253770-C-G		not specified	Uncertain significance (Jan 29, 2024)
7-149253771-A-G		not specified	Likely benign (Feb 07, 2023)
7-149253855-A-C		not specified	Uncertain significance (Mar 23, 2022)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF212	protein_coding	protein_coding	ENST00000335870	5	15959

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00000194	0.892	125587	0	161	125748	0.000640

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.605	261	290	0.900	0.0000172	3200
Missense in Polyphen		94	108.66	0.86507		1178
Synonymous	0.0118	121	121	0.999	0.00000708	1001
Loss of Function	1.59	12	19.6	0.612	9.32e-7	229

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000703	0.000701
Ashkenazi Jewish	0.000147	0.0000992
East Asian	0.000381	0.000381
Finnish	0.000232	0.000231
European (Non-Finnish)	0.00108	0.00107
Middle Eastern	0.000381	0.000381
South Asian	0.0000653	0.0000653
Other	0.000326	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.112

Intolerance Scores

• loftool: 0.883
• rvis_EVS: 0.29
• rvis_percentile_EVS: 71.6

Haploinsufficiency Scores

• pHI: 0.611
• hipred: N
• hipred_score: 0.248
• ghis: 0.507

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.898

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp212

Gene ontology

• Biological process: regulation of transcription, DNA-templated;regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;zinc ion binding;identical protein binding