ZNF227

zinc finger protein 227, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:44207547-44237268

Links

ENSG00000131115 ∙ NCBI:7770 ∙ ∙ HGNC:13020 ∙ Uniprot:Q86WZ6 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF227 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF227 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			34			34
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	34	0	0

Variants in ZNF227

This is a list of pathogenic ClinVar variants found in the ZNF227 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-44217826-A-C		not specified	Uncertain significance (Mar 16, 2022)
19-44217840-G-C		not specified	Uncertain significance (Mar 29, 2022)
19-44228527-T-C		not specified	Uncertain significance (Dec 01, 2022)
19-44229793-T-C		not specified	Uncertain significance (May 18, 2023)
19-44234729-C-T		not specified	Uncertain significance (Feb 23, 2023)
19-44234866-G-A		not specified	Uncertain significance (Mar 16, 2024)
19-44234896-C-G		not specified	Uncertain significance (Apr 03, 2023)
19-44234942-T-C		not specified	Uncertain significance (Jan 23, 2023)
19-44235049-T-C		not specified	Uncertain significance (Jun 09, 2022)
19-44235180-T-G		not specified	Uncertain significance (Nov 22, 2022)
19-44235261-C-G		not specified	Uncertain significance (Dec 05, 2022)
19-44235286-A-C		not specified	Uncertain significance (Jan 23, 2023)
19-44235301-C-T		not specified	Uncertain significance (Apr 15, 2024)
19-44235418-G-A		not specified	Uncertain significance (Nov 09, 2021)
19-44235440-C-T		not specified	Uncertain significance (May 09, 2024)
19-44235461-G-A		not specified	Uncertain significance (Jun 02, 2023)
19-44235566-C-T		not specified	Uncertain significance (Apr 07, 2022)
19-44235598-G-A		not specified	Uncertain significance (Jun 23, 2021)
19-44235617-G-A		not specified	Uncertain significance (Apr 09, 2024)
19-44235648-G-T		not specified	Uncertain significance (Apr 04, 2024)
19-44235698-T-G		not specified	Uncertain significance (Nov 13, 2023)
19-44235787-T-A		not specified	Uncertain significance (Jan 30, 2024)
19-44235890-C-T		not specified	Uncertain significance (May 23, 2023)
19-44235898-A-G		not specified	Uncertain significance (Oct 24, 2023)
19-44235984-A-C		not specified	Uncertain significance (Feb 26, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF227	protein_coding	protein_coding	ENST00000313040	4	29722

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
9.25e-11	0.899	125491	3	253	125747	0.00102

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.362	410	431	0.951	0.0000218	5369
Missense in Polyphen		167	202.78	0.82355		2528
Synonymous	-1.09	168	151	1.11	0.00000765	1383
Loss of Function	1.89	21	32.7	0.643	0.00000188	414

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00116	0.00115
Ashkenazi Jewish	0.00616	0.00607
East Asian	0.000326	0.000326
Finnish	0.0000924	0.0000924
European (Non-Finnish)	0.00120	0.00119
Middle Eastern	0.000326	0.000326
South Asian	0.000623	0.000621
Other	0.000326	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.102

Intolerance Scores

• rvis_EVS: -1
• rvis_percentile_EVS: 8.47

Haploinsufficiency Scores

• pHI: 0.325
• hipred: N
• hipred_score: 0.132
• ghis: 0.647

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.455

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding