ZNF282

zinc finger protein 282, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 7:149195545-149226238

Links

ENSG00000170265 ∙ NCBI:8427 ∙ OMIM:603397 ∙ HGNC:13076 ∙ Uniprot:Q9UDV7 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF282 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF282 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			32	1		33
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	32	1	0

Variants in ZNF282

This is a list of pathogenic ClinVar variants found in the ZNF282 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
7-149195744-C-G		not specified	Uncertain significance (Jul 13, 2021)
7-149198354-G-A		not specified	Uncertain significance (May 31, 2023)
7-149198424-T-G		not specified	Uncertain significance (Feb 28, 2023)
7-149198436-A-G		not specified	Uncertain significance (Jul 13, 2022)
7-149198583-C-T		not specified	Uncertain significance (Dec 06, 2022)
7-149198624-G-A		not specified	Uncertain significance (May 01, 2024)
7-149207353-G-A		not specified	Uncertain significance (Oct 05, 2021)
7-149207360-G-A		not specified	Uncertain significance (Apr 25, 2022)
7-149207437-G-A		not specified	Uncertain significance (Mar 16, 2024)
7-149210597-T-G		not specified	Uncertain significance (Apr 05, 2023)
7-149210600-T-G		not specified	Uncertain significance (Jun 01, 2023)
7-149210645-T-A		not specified	Uncertain significance (Nov 09, 2021)
7-149210663-G-A		not specified	Uncertain significance (Feb 15, 2023)
7-149210690-C-T		not specified	Uncertain significance (Jun 16, 2024)
7-149212366-A-G		not specified	Uncertain significance (Oct 20, 2021)
7-149212366-A-T		not specified	Uncertain significance (Jan 24, 2024)
7-149212407-G-C		not specified	Uncertain significance (Jun 05, 2023)
7-149212432-G-A		not specified	Uncertain significance (May 14, 2024)
7-149212451-T-G		not specified	Uncertain significance (Mar 21, 2023)
7-149213706-C-G		not specified	Uncertain significance (Dec 28, 2023)
7-149223884-A-C		not specified	Uncertain significance (Nov 21, 2023)
7-149223899-C-T		not specified	Uncertain significance (Sep 16, 2021)
7-149223946-C-A		not specified	Uncertain significance (Jan 10, 2023)
7-149223955-C-T		not specified	Uncertain significance (Mar 06, 2023)
7-149223992-T-C		not specified	Likely benign (Apr 08, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF282	protein_coding	protein_coding	ENST00000262085	8	30763

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.163	0.837	125735	0	12	125747	0.0000477

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.14	269	388	0.694	0.0000260	4303
Missense in Polyphen		77	142.32	0.54104		1471
Synonymous	0.776	159	172	0.925	0.0000126	1341
Loss of Function	3.68	7	28.0	0.250	0.00000130	316

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000616	0.0000615
Ashkenazi Jewish	0.000199	0.000198
East Asian	0.00	0.00
Finnish	0.000328	0.000323
European (Non-Finnish)	0.0000190	0.0000176
Middle Eastern	0.00	0.00
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Binds to the U5 repressive element (U5RE) of the human T cell leukemia virus type I long terminal repeat. It recognizes the 5'-TCCACCCC-3' sequence as a core motif and exerts a strong repressive effect on HTLV-I LTR-mediated expression.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.108

Intolerance Scores

• loftool: 0.365
• rvis_EVS: -0.29
• rvis_percentile_EVS: 33.2

Haploinsufficiency Scores

• pHI: 0.580
• hipred: Y
• hipred_score: 0.520
• ghis: 0.519

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.418

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp282

Gene ontology

• Biological process: regulation of transcription, DNA-templated;regulation of transcription by RNA polymerase II;negative regulation of transcription, DNA-templated
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;zinc ion binding