ZNF32

zinc finger protein 32, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 10:43643859-43648881

Links

ENSG00000169740 ∙ NCBI:7580 ∙ OMIM:194539 ∙ HGNC:13095 ∙ Uniprot:P17041 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF32 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF32 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			13			13
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	13	0	0

Variants in ZNF32

This is a list of pathogenic ClinVar variants found in the ZNF32 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-43644203-C-A		not specified	Uncertain significance (Sep 12, 2023)
10-43644249-A-G		not specified	Uncertain significance (Aug 21, 2023)
10-43644250-T-C			Uncertain significance (Nov 01, 2022)
10-43644268-C-T		not specified	Uncertain significance (May 15, 2023)
10-43644388-C-T		not specified	Uncertain significance (Feb 28, 2024)
10-43644418-C-T		not specified	Uncertain significance (Apr 12, 2022)
10-43644526-C-T		not specified	Uncertain significance (Dec 16, 2023)
10-43644554-C-A		not specified	Uncertain significance (Feb 05, 2024)
10-43644594-G-A		not specified	Uncertain significance (Apr 07, 2022)
10-43644612-C-T		not specified	Uncertain significance (Oct 04, 2022)
10-43644613-G-A		not specified	Uncertain significance (Oct 04, 2022)
10-43644651-T-C		not specified	Uncertain significance (Feb 17, 2022)
10-43644783-T-C		not specified	Uncertain significance (Jul 28, 2021)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF32	protein_coding	protein_coding	ENST00000395797	2	4998

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0326	0.931	125738	0	9	125747	0.0000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.42	99	148	0.671	0.00000741	1806
Missense in Polyphen		25	47.118	0.53058		563
Synonymous	0.781	48	55.4	0.866	0.00000289	508
Loss of Function	1.80	4	10.2	0.391	5.27e-7	132

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000289	0.0000289
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000544	0.0000544
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.0000440	0.0000439
Middle Eastern	0.0000544	0.0000544
South Asian	0.00	0.00
Other	0.000163	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Recessive Scores

• pRec: 0.113

Intolerance Scores

• loftool: 0.342
• rvis_EVS: -0.16
• rvis_percentile_EVS: 41.25

Haploinsufficiency Scores

• pHI: 0.358
• hipred: N
• hipred_score: 0.370
• ghis: 0.615

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.916

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp637

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding