ZNF320

zinc finger protein 320, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:52860851-52897693

Links

ENSG00000182986 ∙ NCBI:162967 ∙ OMIM:606427 ∙ HGNC:13842 ∙ Uniprot:A2RRD8 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF320 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF320 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			32	2		34
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	32	2	0

Variants in ZNF320

This is a list of pathogenic ClinVar variants found in the ZNF320 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-52880619-T-C		not specified	Uncertain significance (Mar 11, 2025)
19-52880623-C-G		not specified	Uncertain significance (Oct 18, 2024)
19-52880642-T-C		not specified	Likely benign (Mar 31, 2022)
19-52880673-C-A		not specified	Uncertain significance (Mar 20, 2024)
19-52880700-T-G		not specified	Uncertain significance (Jul 22, 2024)
19-52880831-C-T		not specified	Uncertain significance (Oct 20, 2024)
19-52880864-A-G		not specified	Uncertain significance (Feb 16, 2023)
19-52880871-C-T		not specified	Uncertain significance (Dec 07, 2024)
19-52880886-C-T		not specified	Likely benign (Apr 08, 2024)
19-52880943-T-C		not specified	Uncertain significance (Oct 05, 2023)
19-52881009-C-G		not specified	Uncertain significance (Jan 03, 2024)
19-52881014-C-T		not specified	Uncertain significance (Aug 02, 2021)
19-52881015-G-A		not specified	Uncertain significance (Jan 31, 2024)
19-52881039-C-A		not specified	Uncertain significance (Jan 27, 2025)
19-52881083-C-G		not specified	Uncertain significance (May 05, 2023)
19-52881083-C-T		not specified	Uncertain significance (Jan 09, 2025)
19-52881092-T-C		not specified	Uncertain significance (Jan 01, 2025)
19-52881093-C-G		not specified	Uncertain significance (Mar 22, 2023)
19-52881167-C-T		not specified	Uncertain significance (Jan 18, 2025)
19-52881224-T-C		not specified	Uncertain significance (Nov 10, 2021)
19-52881297-C-T		not specified	Uncertain significance (Feb 28, 2023)
19-52881303-A-G		not specified	Uncertain significance (Sep 06, 2022)
19-52881335-T-A		not specified	Uncertain significance (Mar 04, 2024)
19-52881412-A-T		not specified	Uncertain significance (Nov 28, 2024)
19-52881668-C-A		not specified	Uncertain significance (Dec 06, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF320	protein_coding	protein_coding	ENST00000595635	3	33904

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.219	0.658	100656	0	1	100657	0.00000497

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.558	241	267	0.904	0.0000133	3379
Missense in Polyphen		52	79.824	0.65143		1107
Synonymous	-0.777	101	91.5	1.10	0.00000458	893
Loss of Function	1.08	1	3.01	0.332	1.29e-7	34

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.00	0.00
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000636	0.0000636
Finnish	0.00	0.00
European (Non-Finnish)	0.00	0.00
Middle Eastern	0.0000636	0.0000636
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0984

Intolerance Scores

• loftool: 0.486
• rvis_EVS: -0.29
• rvis_percentile_EVS: 33.2

Haploinsufficiency Scores

• pHI: 0.126
• hipred: N
• hipred_score: 0.174
• ghis: 0.579

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.204

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding