ZNF324

zinc finger protein 324, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:58467056-58475436

Links

ENSG00000083812 ∙ NCBI:25799 ∙ OMIM:617477 ∙ HGNC:14096 ∙ Uniprot:O75467 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF324 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF324 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			68	5		73
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	68	5	0

Variants in ZNF324

This is a list of pathogenic ClinVar variants found in the ZNF324 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-58469231-G-A		not specified	Uncertain significance (Sep 08, 2024)
19-58469268-G-A		not specified	Likely benign (Aug 20, 2024)
19-58469736-A-C		not specified	Uncertain significance (Jan 23, 2025)
19-58469743-G-A		not specified	Uncertain significance (Jan 29, 2025)
19-58469754-G-A		not specified	Uncertain significance (Jan 10, 2025)
19-58469769-C-T		not specified	Uncertain significance (Oct 26, 2021)
19-58469775-G-A		not specified	Uncertain significance (Oct 25, 2024)
19-58469800-C-T		not specified	Uncertain significance (Feb 15, 2023)
19-58469809-C-A		not specified	Uncertain significance (Jul 30, 2024)
19-58469836-G-A		not specified	Uncertain significance (Aug 02, 2022)
19-58470764-C-T		not specified	Uncertain significance (Jul 20, 2021)
19-58470769-G-A		not specified	Uncertain significance (Sep 14, 2022)
19-58470791-A-T		not specified	Uncertain significance (Feb 05, 2024)
19-58470794-C-A		not specified	Uncertain significance (Dec 03, 2024)
19-58470797-C-T		not specified	Likely benign (Dec 15, 2023)
19-58470812-C-T		not specified	Uncertain significance (Dec 21, 2022)
19-58470832-G-A		not specified	Uncertain significance (Oct 12, 2024)
19-58470868-C-T		not specified	Uncertain significance (Apr 05, 2023)
19-58470871-G-A		not specified	Uncertain significance (Jan 23, 2025)
19-58470891-G-T		not specified	Uncertain significance (Jun 22, 2023)
19-58470940-G-A		not specified	Uncertain significance (Jan 06, 2023)
19-58470947-G-T		not specified	Uncertain significance (Sep 02, 2024)
19-58470953-G-A		not specified	Uncertain significance (Dec 04, 2024)
19-58470959-C-G		not specified	Uncertain significance (Aug 13, 2021)
19-58470964-G-A		not specified	Uncertain significance (Dec 04, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF324	protein_coding	protein_coding	ENST00000536459	3	6523

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0384	0.960	125736	0	10	125746	0.0000398

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.03	331	388	0.853	0.0000286	3522
Missense in Polyphen		83	175.5	0.47294		1658
Synonymous	-4.37	257	182	1.41	0.0000149	1180
Loss of Function	2.82	6	19.4	0.309	0.00000117	164

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000619	0.0000615
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000708	0.0000703
Middle Eastern	0.00	0.00
South Asian	0.0000327	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation. May be involved in regulation of cell proliferation. {ECO:0000305|PubMed:11779640}.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Intolerance Scores

• loftool: 0.438
• rvis_EVS: -0.29
• rvis_percentile_EVS: 33.47

Haploinsufficiency Scores

• pHI: 0.159
• hipred: N
• hipred_score: 0.380
• ghis: 0.532

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: S
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.313

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp324

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding