ZNF326

zinc finger protein 326, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 1:89995110-90035533

Links

ENSG00000162664 ∙ NCBI:284695 ∙ OMIM:614601 ∙ HGNC:14104 ∙ Uniprot:Q5BKZ1 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF326 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF326 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			22			22
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	22	0	0

Variants in ZNF326

This is a list of pathogenic ClinVar variants found in the ZNF326 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-89995267-G-A		not specified	Uncertain significance (Jan 07, 2022)
1-89998134-A-G		not specified	Uncertain significance (Nov 07, 2022)
1-90005020-G-A		not specified	Uncertain significance (Aug 15, 2023)
1-90005163-A-G		not specified	Uncertain significance (Aug 12, 2021)
1-90007373-A-G		not specified	Uncertain significance (Mar 30, 2024)
1-90007419-T-A		not specified	Uncertain significance (Mar 30, 2024)
1-90007471-G-C		not specified	Uncertain significance (Mar 30, 2024)
1-90007473-G-A		not specified	Uncertain significance (Mar 30, 2024)
1-90007528-C-A		not specified	Uncertain significance (Sep 06, 2022)
1-90007593-A-G		not specified	Uncertain significance (Mar 30, 2024)
1-90007683-G-A		not specified	Uncertain significance (Mar 04, 2024)
1-90007704-A-G		not specified	Uncertain significance (Aug 02, 2023)
1-90010155-A-G		not specified	Uncertain significance (Jul 20, 2021)
1-90010191-A-G		not specified	Uncertain significance (Apr 07, 2022)
1-90010221-G-A		not specified	Uncertain significance (Jan 10, 2023)
1-90013176-C-T		not specified	Uncertain significance (Jan 10, 2023)
1-90013180-G-A		not specified	Uncertain significance (May 23, 2023)
1-90017385-A-G		not specified	Uncertain significance (Oct 13, 2023)
1-90018762-A-G		not specified	Uncertain significance (May 30, 2024)
1-90020819-A-G		not specified	Uncertain significance (Jun 07, 2023)
1-90020826-G-C		not specified	Uncertain significance (Nov 09, 2022)
1-90020899-C-T		not specified	Uncertain significance (Jul 11, 2023)
1-90020914-G-C		not specified	Uncertain significance (Oct 05, 2023)
1-90022323-C-T		not specified	Uncertain significance (Jan 23, 2024)
1-90027400-T-C		not specified	Uncertain significance (May 31, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF326	protein_coding	protein_coding	ENST00000340281	12	40420

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.902	0.0982	125735	0	12	125747	0.0000477

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.58	241	321	0.751	0.0000169	3846
Missense in Polyphen		83	137.36	0.60426		1529
Synonymous	1.53	84	104	0.809	0.00000549	1032
Loss of Function	4.18	5	29.5	0.169	0.00000180	351

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000156	0.000155
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.000140	0.000139
European (Non-Finnish)	0.0000357	0.0000352
Middle Eastern	0.00	0.00
South Asian	0.0000332	0.0000327
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Core component of the DBIRD complex, a multiprotein complex that acts at the interface between core mRNP particles and RNA polymerase II (RNAPII) and integrates transcript elongation with the regulation of alternative splicing: the DBIRD complex affects local transcript elongation rates and alternative splicing of a large set of exons embedded in (A + T)-rich DNA regions. May play a role in neuronal differentiation and is able to bind DNA and activate expression in vitro. {ECO:0000269|PubMed:22446626}.

Recessive Scores

• pRec: 0.115

Intolerance Scores

• loftool: 0.395
• rvis_EVS: -0.47
• rvis_percentile_EVS: 23.25

Haploinsufficiency Scores

• pHI: 0.126
• hipred: N
• hipred_score: 0.497
• ghis: 0.585

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.520

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp326

Gene ontology

• Biological process: mRNA processing;RNA splicing;regulation of DNA-templated transcription, elongation;regulation of RNA splicing
• Cellular component: nucleoplasm;nuclear matrix;intracellular membrane-bounded organelle;DBIRD complex
• Molecular function: RNA polymerase II complex binding;DNA binding;RNA binding;protein binding;metal ion binding