ZNF329

zinc finger protein 329, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:58126248-58155110

Links

ENSG00000181894 ∙ NCBI:79673 ∙ ∙ HGNC:14209 ∙ Uniprot:Q86UD4 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF329 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF329 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			47	3		50
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	47	3	0

Variants in ZNF329

This is a list of pathogenic ClinVar variants found in the ZNF329 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-58127921-C-T		not specified	Uncertain significance (Feb 28, 2023)
19-58127964-G-A		not specified	Uncertain significance (Jan 24, 2023)
19-58127975-G-C		not specified	Uncertain significance (Jun 07, 2024)
19-58127979-C-T		not specified	Uncertain significance (Oct 13, 2023)
19-58128085-G-C		not specified	Uncertain significance (May 13, 2024)
19-58128087-G-C		not specified	Uncertain significance (Mar 02, 2023)
19-58128212-T-C		not specified	Uncertain significance (Sep 01, 2021)
19-58128218-C-T		not specified	Uncertain significance (Jan 30, 2024)
19-58128224-T-C		not specified	Uncertain significance (Sep 01, 2021)
19-58128240-T-C		not specified	Uncertain significance (Aug 13, 2021)
19-58128264-G-A		not specified	Uncertain significance (Mar 22, 2023)
19-58128269-G-A		not specified	Uncertain significance (Mar 01, 2024)
19-58128290-C-T		not specified	Uncertain significance (May 14, 2024)
19-58128353-G-A		not specified	Uncertain significance (Dec 31, 2024)
19-58128375-C-T		not specified	Uncertain significance (Aug 02, 2021)
19-58128391-A-T		not specified	Uncertain significance (Feb 21, 2025)
19-58128437-G-A		not specified	Uncertain significance (May 20, 2024)
19-58128441-C-T		not specified	Uncertain significance (Dec 17, 2024)
19-58128447-G-A		not specified	Uncertain significance (Feb 11, 2025)
19-58128453-C-T		not specified	Uncertain significance (Aug 16, 2021)
19-58128467-C-G		not specified	Uncertain significance (Feb 25, 2025)
19-58128472-C-A		not specified	Uncertain significance (Aug 22, 2023)
19-58128512-G-T		not specified	Uncertain significance (Mar 24, 2023)
19-58128530-G-A		not specified	Uncertain significance (Apr 20, 2023)
19-58128533-A-C		not specified	Uncertain significance (May 20, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF329	protein_coding	protein_coding	ENST00000598312	1	28859

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.000370	0.959	125700	0	47	125747	0.000187

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.116	287	293	0.981	0.0000147	3592
Missense in Polyphen		114	127.1	0.89695		1563
Synonymous	-0.525	115	108	1.06	0.00000570	991
Loss of Function	1.82	8	15.8	0.506	8.27e-7	237

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000362	0.000362
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000549	0.0000544
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.000266	0.000264
Middle Eastern	0.0000549	0.0000544
South Asian	0.000166	0.000163
Other	0.000338	0.000326

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.

Recessive Scores

• pRec: 0.0952

Intolerance Scores

• loftool: 0.661
• rvis_EVS: -0.4
• rvis_percentile_EVS: 26.73

Haploinsufficiency Scores

• pHI: 0.172
• hipred: N
• hipred_score: 0.155
• ghis: 0.582

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.223

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Zfp329

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding