ZNF333

zinc finger protein 333, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 19:14689801-14733746

Links

ENSG00000160961 ∙ NCBI:84449 ∙ OMIM:611811 ∙ HGNC:15624 ∙ Uniprot:Q96JL9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF333 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF333 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			46	4		50
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	46	4	0

Variants in ZNF333

This is a list of pathogenic ClinVar variants found in the ZNF333 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-14695010-G-A		not specified	Uncertain significance (Nov 18, 2022)
19-14695037-G-A		not specified	Uncertain significance (Feb 11, 2025)
19-14695073-G-A		not specified	Uncertain significance (Jun 22, 2021)
19-14695077-G-A		not specified	Uncertain significance (Oct 10, 2023)
19-14695595-T-A		not specified	Uncertain significance (Dec 15, 2023)
19-14695625-G-A		not specified	Uncertain significance (Jul 09, 2024)
19-14695635-G-C		not specified	Uncertain significance (Mar 25, 2024)
19-14699212-A-C		not specified	Uncertain significance (Dec 17, 2023)
19-14699265-C-T		not specified	Uncertain significance (Nov 25, 2024)
19-14705054-G-C		not specified	Uncertain significance (Jan 23, 2023)
19-14705058-C-G		not specified	Uncertain significance (Apr 04, 2024)
19-14705087-C-T		not specified	Uncertain significance (Jan 19, 2022)
19-14705093-A-G		not specified	Uncertain significance (Dec 10, 2024)
19-14705129-C-T		not specified	Likely benign (Dec 05, 2022)
19-14705130-G-A		not specified	Uncertain significance (Nov 13, 2024)
19-14705148-C-T		not specified	Uncertain significance (Apr 26, 2023)
19-14705150-C-A		not specified	Uncertain significance (Nov 18, 2022)
19-14705169-C-T		not specified	Likely benign (Jan 26, 2022)
19-14706746-C-T		not specified	Uncertain significance (Feb 26, 2024)
19-14706747-G-A		not specified	Uncertain significance (Oct 02, 2023)
19-14706768-A-G		not specified	Likely benign (Apr 28, 2022)
19-14715382-C-T		not specified	Uncertain significance (Sep 03, 2024)
19-14715387-C-A		not specified	Uncertain significance (Feb 05, 2024)
19-14715459-G-A		not specified	Likely benign (Jan 18, 2023)
19-14716122-C-A		not specified	Uncertain significance (May 02, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF333	protein_coding	protein_coding	ENST00000292530	11	43946

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
7.79e-18	0.0153	125612	0	136	125748	0.000541

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.820	330	375	0.881	0.0000199	4359
Missense in Polyphen		26	33.095	0.78562		314
Synonymous	1.79	118	146	0.811	0.00000813	1266
Loss of Function	0.477	28	30.9	0.907	0.00000164	346

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000416	0.000416
Ashkenazi Jewish	0.000794	0.000794
East Asian	0.000109	0.000109
Finnish	0.000282	0.000277
European (Non-Finnish)	0.000802	0.000791
Middle Eastern	0.000109	0.000109
South Asian	0.000523	0.000523
Other	0.000490	0.000489

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0849

Intolerance Scores

• loftool: 0.922
• rvis_EVS: 0.4
• rvis_percentile_EVS: 76.45

Haploinsufficiency Scores

• pHI: 0.124
• hipred: N
• hipred_score: 0.148
• ghis: 0.488

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.604

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	High
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;metal ion binding