ZNF337

zinc finger protein 337, the group of Zinc fingers C2H2-type

Basic information

Region (hg38): 20:25673195-25696853

Links

ENSG00000130684 ∙ NCBI:26152 ∙ ∙ HGNC:15809 ∙ Uniprot:Q9Y3M9 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the ZNF337 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the ZNF337 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			50	1		51
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	50	1	0

Variants in ZNF337

This is a list of pathogenic ClinVar variants found in the ZNF337 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
20-25675069-C-T		not specified	Uncertain significance (Aug 12, 2021)
20-25675070-G-A		not specified	Uncertain significance (Aug 16, 2022)
20-25675070-G-C		not specified	Uncertain significance (Jul 17, 2023)
20-25675078-C-T		not specified	Uncertain significance (Nov 14, 2024)
20-25675079-G-C		not specified	Uncertain significance (Oct 01, 2024)
20-25675129-C-A		not specified	Uncertain significance (Apr 05, 2023)
20-25675225-T-C		not specified	Uncertain significance (Jan 09, 2024)
20-25675262-A-G		not specified	Uncertain significance (Jun 02, 2023)
20-25675300-T-C		not specified	Uncertain significance (Apr 11, 2023)
20-25675309-A-G		not specified	Uncertain significance (Dec 07, 2021)
20-25675336-G-A		not specified	Uncertain significance (Apr 04, 2023)
20-25675397-T-C		not specified	Uncertain significance (Jan 29, 2024)
20-25675502-C-T		not specified	Uncertain significance (Feb 22, 2024)
20-25675523-A-G		not specified	Uncertain significance (Sep 04, 2024)
20-25675552-C-T		not specified	Uncertain significance (Apr 20, 2024)
20-25675556-C-T		not specified	Uncertain significance (Apr 15, 2024)
20-25675576-G-A		not specified	Uncertain significance (Mar 21, 2022)
20-25675579-C-T		not specified	Uncertain significance (Jul 19, 2022)
20-25675645-T-G		not specified	Uncertain significance (Dec 07, 2021)
20-25675702-G-A		not specified	Uncertain significance (Mar 01, 2024)
20-25675720-C-T		not specified	Uncertain significance (Sep 29, 2023)
20-25675757-A-T		not specified	Uncertain significance (Mar 01, 2024)
20-25675758-G-T		not specified	Uncertain significance (May 08, 2023)
20-25675804-C-T		not specified	Uncertain significance (Oct 12, 2024)
20-25675888-C-T		not specified	Uncertain significance (Dec 11, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
ZNF337	protein_coding	protein_coding	ENST00000376436	4	22627

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00368	0.648	125706	0	9	125715	0.0000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.452	418	393	1.06	0.0000208	4938
Missense in Polyphen		70	64.77	1.0808		791
Synonymous	-0.765	155	143	1.08	0.00000705	1392
Loss of Function	0.544	4	5.36	0.746	2.27e-7	61

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000179	0.000179
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.00000880	0.00000879
Middle Eastern	0.00	0.00
South Asian	0.0000383	0.0000327
Other	0.000186	0.000163

dbNSFP

Source: dbNSFP

• Function: FUNCTION: May be involved in transcriptional regulation.
• Pathway: Gene expression (Transcription);Generic Transcription Pathway;RNA Polymerase II Transcription (Consensus)

Recessive Scores

• pRec: 0.0985

Intolerance Scores

• loftool: 0.898
• rvis_EVS: -0.02
• rvis_percentile_EVS: 52.25

Haploinsufficiency Scores

• pHI: 0.179
• hipred: N
• hipred_score: 0.197
• ghis: 0.554

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.916

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Gene ontology

• Biological process: regulation of transcription by RNA polymerase II
• Cellular component: nucleus
• Molecular function: DNA-binding transcription factor activity, RNA polymerase II-specific;DNA binding;protein binding;metal ion binding